This is the Archive of the Amber Molecular Dynamics Software Mailing List. This contains many messages from amber users and developers discussing the Amber software and molecular dynamics.
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AMBER MAILING LIST ARCHIVE | archive.ambermd.org Reviews
https://archive.ambermd.org
This is the Archive of the Amber Molecular Dynamics Software Mailing List. This contains many messages from amber users and developers discussing the Amber software and molecular dynamics.
AMBER on Macintosh: Building AmberTools 1.5 on a 10.4.x Tiger with gcc/gfortran 4.3
http://amberonmac.blogspot.com/2011/03/building-ambertools-15-on-104x-tiger.html
This is an archive of issues for AMBER. Running on Macintosh computers. For reporting issues to be solved, please report it in the AMBER mail reflector. Friday, April 22, 2011. Building AmberTools 1.5 on a 10.4.x Tiger with gcc/gfortran 4.3. I'll be using BASH environment in my examples here although I am a die-hard TCSH fan, I also speak BASH. I envision this document is for first time users who are somehow macports savvy. To learn more about macports, see http:/ guide.macports.org/ . Set up the environ...
AMBER on Macintosh: AmberTools 1.5, the Intel compilers, and the Intel Math Kernel Library (MKL)
http://amberonmac.blogspot.com/2011/04/ambertools-15-intel-compilers-and-intel.html
This is an archive of issues for AMBER. Running on Macintosh computers. For reporting issues to be solved, please report it in the AMBER mail reflector. Monday, April 18, 2011. AmberTools 1.5, the Intel compilers, and the Intel Math Kernel Library (MKL). We're pleased to announce the release of AmberTools 1.5, now available from the Amber website. It includes several new packages:. A much-expanded program for energetic analyses of trajectories. An expanded trajectory analysis program. Opt/local/include/g...
Amber Tutorials
http://ambermd.org/tutorials
Here are a number of tutorials prepared by the AMBER developers to help you in learning how to use the AMBER software suite. The tutorials are divided into basic, advanced, and analysis-specific. If you are new to AMBER you should start at the beginning of the introductory tutorials and work your way through linearly. If you are already familiar with AMBER then you should consider skipping directly to the advanced tutorials that interest you. Ligands, modified residues, lipids, etc. NMR and Xtal analysis.
Frequently Asked Questions (FAQ)
http://ambermd.org/questions.html
AMBER FAQ (Frequently Asked Questions). This list of questions, problems, answers and opinions has been developed over the years based on user questions and discussions on the Amber Mail Reflector. http:/ archive.ambermd.org/. If you have any suggestions to improve these answers, please send them to. If you want a general discussion). Selected responses from the Amber Reflector. Installation and Compilation questions. Some parameter is too small. Or can't get memory). Some general LEaP questions. I keep ...
AMBER Info Page
http://lists.ambermd.org/mailman/listinfo/amber
AMBER - AMBER Mailing List. This is the AMBER Mailing List. It is designed to provide a forum for users of the AMBER Molecular Dynamics and related software to ask questions related to AMBER and Molecular Dynamics Simulations in general. To see the collection of prior postings to the list, visit the Archives. To post a message to all the list members, send email to amber@ambermd.org. You can subscribe to the list, or change your existing subscription, in the sections below. Send a blank email to:.
AMBER on Macintosh: Building AmberTools 1.5 on a 10.5.x or 10.6.x with gcc/gfortran 4.3
http://amberonmac.blogspot.com/2011/04/building-ambertools-15-on-105x-or-106x.html
This is an archive of issues for AMBER. Running on Macintosh computers. For reporting issues to be solved, please report it in the AMBER mail reflector. Saturday, April 23, 2011. Building AmberTools 1.5 on a 10.5.x or 10.6.x with gcc/gfortran 4.3. 105x / 10.6.x. Macports gcc45 is a set of stable compilers that you should be trying first. You are also advised to unset MKL HOME since MKL gives some bad results for certain tests. Tar jxvf /Download/AmberTools-1.5.tar.bz2 -C /opt. Export AMBERHOME=/opt/amber...
AMBER on Macintosh: Guestbook
http://amberonmac.blogspot.com/2006/05/guestbook.html
This is an archive of issues for AMBER. Running on Macintosh computers. For reporting issues to be solved, please report it in the AMBER mail reflector. Tuesday, May 09, 2006. This entry is now dedicated to a guestbook function. Posted by Mengjuei Hsieh. I need a helping hand to correct my typo. Dear MacAmber Users,. Have you ever got success in compiling AmberTools 1.5 on Mac OSX 10.7? If yes, could you share the experiment with me? Thank you very much! Subscribe to: Post Comments (Atom).
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http://www.rosswalker.co.uk/mainframe1.htm
Associate Research Professor &. High Performance Computing Consultant. San Diego Supercomputer Center &. Leader: Walker Molecular Dynamics Lab. My Curriculum Vitae is available here. The Walker Molecular Dynamics Lab is here. San Diego Supercomputer Center. University of California San Diego. 9500 Gilman Drive #0505. La Jolla, CA, 92093-0505. 1 (858) 822 0854. Ross 'at' rosswalker.co.uk. Exxact NVIDIA Digits Deep Learning Dev Boxes. 4 GPU, 8 GPU and 10 GPU NVIDIA Digits Dev Box. DGX-1. My interests li...
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AMBER MAILING LIST ARCHIVE
Last Updated: Fri Mar 16 05:50:58 2018. This is an archive of the AMBER Mail Reflector (http:/ archive.ambermd.org/). For information on subscribing to the Amber mail reflector please see http:/ ambermd.org/. This archive contains messages dating back to 1999. Please select a month from the list below to view messages that were sent during that month. Alternatively you can search the archive using the form below. Entire archive as one page (Huge). This Amber archive list is managed by Ross Walker.
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