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Welcome | bio.cs.washington.edu
Biology has become an information science with close ties to Computer Science. Large databases and sophisticated algorithms are now essential tools for biologists ...
Software | bio.cs.washington.edu
StatSigMA computes the statistical significance of multiple sequence alignments (of either nucleotide or amino acid sequences), much as BLAST's E-values provide ...
MEME Suite - Introduction
A software package to discover motifs (highly conserved regions) in groups of related DNA or protein sequences and, search sequence databases using motifs. [Commercial]
FootPrinter: a program designed for phylogenetic footprinting
This algorithm has been implemented in a program called FootPrinter, available at http://bio.cs.washington.edu/software.html, both in source code and through a web ...
MicroFootPrinter: a tool for phylogenetic footprinting in ...
... among the homologous sequences in order to make more accurate predictions. The software is called MicroFootPrinter and is available at http://bio.cs.washington.edu ...
Conserved non-coding sequence - Wikipedia, the free encyclopedia
http://bio.cs.washington.edu/software: GenomeTrafac: http://genometrafac.cchmc.org/genome-trafac/index.jsp: rVISTA: http://rvista.dcode.org/ Toucan: http://homes.esat.kuleuven.be ...
BIC Capstone Workshop BSC 4934: Q
[bio.cs.washington.edu/assessment] Gibbs Sampling Methods: AlignACE, GLAM, SeSiMCMC, MotifSampler Weight Matrix Methods: ANN-Spec, Consensus,
DNA Patterns & Motifs - Web Bench
DILIMOT is a server for finding short (3-8 amino acids), over-represented ... http://bio.cs.washington.edu/software#phyme
PLoS Computational Biology: A Computational Pipeline for High ...
(See Figure 1, Materials and Methods, and the online supplement at http://bio.cs.washington.edu/supplements /yzizhen/pipeline for more details.)
Evolutionary conservation of a phosphate transporter in the ...
... of the respective initiator ATGs were analyzed for conserved motifs by using footprinter 2.0 Web serve (available at http://bio.cs.washington.edu ...
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