phencode.bx.psu.edu
PhenCode: Paving the Path between Phenotype and Genome
PhenCode: Paving the Path between Phenotype and Genome. PhenCode is a collaborative project to better understand the relationship between genotype and phenotype in humans. It connects human phenotype and clinical data in various locus-specific mutation databases. LSDBs) with data on genome sequences, evolutionary history, and function in the UCSC Genome Browser. PhenCode is a collaboration among researchers at Penn State, UC Santa Cruz, and locus experts at other institutions. Terms and conditions of use.
lovd.bx.psu.edu
Switch gene - The Globin Gene Server - Leiden Open Variation Database
The Globin Gene Server. LOVD v.2.0 Build 36 [ Current LOVD status. Please select a gene database:. ALOX5AP (arachidonate 5-lipoxygenase-activating protein). ARG2 (arginase, type II). ASS1 (argininosuccinate synthetase 1). ATRX (alpha thalassemia/mental retardation syndrome X-linked). BCL11A (B-cell CLL/lymphoma 11A). CNTNAP2 (contactin associated protein-like 2). CSNK2A1 (casein kinase 2, alpha 1 polypeptide). EPAS1 (endothelial PAS domain protein 1). FLT1 (fms-related tyrosine kinase 1).
lists.bx.psu.edu
lists.bx.psu.edu Mailing Lists
Listsbx.psu.edu Mailing Lists. Below is a listing of all the public mailing lists on lists.bx.psu.edu. Click on a list name to get more information about the list, or to subscribe, unsubscribe, and change the preferences on your subscription. To visit the general information page for an unadvertised list, open a URL similar to this one, but with a '/' and the list name appended. List administrators, you can visit the list admin overview page. To find the management interface for your list.
globin.bx.psu.edu
Globin Gene Server home page
Welcome to the Globin Gene Server. This site provides data and tools for studying the function of DNA sequences, with an emphasis on those involved in the production of hemoglobin. It includes information about naturally-occurring human hemoglobin mutations and their effects, experimental data related to the regulation of the beta-like globin gene cluster, and software tools for comparing sequences with one another to discover regions that are likely to play significant roles. Images of models and results.
cladimo.bx.psu.edu
CladiMo
1) Alignment or sequence. Alignment in MAF format. MAF - - · Example. Middot; UCSC definition. Sequence in FASTA format. FASTA - - · Example. Middot; NCBI definition. Instructions for obtaining input from Galaxy. Middot; Genome Browser. Paste-in, upload sequence/alignment. Upload a local file. Paste raw text or a URL. List motifs, separated by spaces. e.g. WGATAR TATAA. A Motif must consist of IUPAC symbols. See table below. 3-fold and 4-fold degenerate symbols are not used. Paste-in, upload PWM.
autism.bx.psu.edu
Home - The Girirajan Laboratory
What is the molecular genetic basis of neurodevelopmental disorders? Welcome to the Girirajan Lab website! The primary focus of our research is to discover and characterize genetic changes including genomic deletions and duplications and single nucleotide mutations contributing to neurodevelopmental disorders such as autism, intellectual disability, schizophrenia, epilepsy and congenital malformation. The Girirajan laboratory is affiliated to the following:. The Huck Institutes of the Life Sciences.
weblogin.bx.psu.edu
BX WebLogin :
This site provided by bx computing. Email admin-at-bx.psu.edu. Please enter your authentication information and click the Log In button to continue. Be sure to select the correct realm from the drop-down box if you do not want to log in to the default realm! Dcepsu.edu (PSU Access Account). FPS (Friends of Penn State). SPNEGO works, redirecting. Please wait.
kmergenie.bx.psu.edu
KmerGenie
KmerGenie predictions can be applied to single-k genome assemblers (e.g. Velvet, SOAPdenovo 2, ABySS, Minia). However, multi-k genome assemblers (e.g. SPAdes, IDBA) generally perform better with default parameters (using multiple k values), rather than the single best k predicted by KmerGenie. See a sample report. Generated by KmerGenie from a dataset of bacterial reads. Download KmerGenie sources here: kmergenie-1.6982.tar.gz. You will need Python and R. Major changes since initial release:.
gala.bx.psu.edu
Index of /
Apache Server at gala.bx.psu.edu Port 80.
promoter.bx.psu.edu
Feng Yue lab at Penn State!
Welcome to Yue Lab at Penn State. 1 We received a big data initiative award from Penn State CTSI. 2 Our work in collaboration with Dr. Sander has been acceptd by Cell Stem Cell. Feng is a co-first author. 3 Dr Feng Yue has been named a recipient of the 2015 PhRMA Foundation Research Starter Grant. 4 The mouse ENCODE main integrative analysis paper been acceptd by Nature. Feng is the lead co-first author and Yanli is a co-author in the paper. Co-authors from the lab: Feng, Yanli. 2) Cancer epigenomics: in...
