ch.embnet.org

EMBnet node Switzerland

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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EMBnet node Switzerland | ch.embnet.org Reviews

<META> DESCRIPTION

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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1 embnet node switzerland

2 boxshade

3 clustalw

4 coils

5 fetch

6 ftp server

7 ipcr

8 lalign

9 prss

10 tmpred

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embnet node switzerland,boxshade,clustalw,coils,fetch,ftp server,ipcr,lalign,prss,tmpred,transmembrane regions detection,molecular dynamics tutorial,embnet guides

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EMBnet node Switzerland | ch.embnet.org Reviews

https://ch.embnet.org

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

INTERNAL PAGES

ch.embnet.org

1

Fetch Server

http://ch.embnet.org/software/fetch.html

ID or AC :. SIB Swiss Institute of Bioinformatics. Back to the Top.

2

iPCR Server

http://ch.embnet.org/software/iPCR_form.html

Paste a DNA sequence, ID or AC (ex. U73445) and the two primers (ex. forward AAA[AT]AA and reverse AAAGGG), select the format, and the options and click the Run iPCR button. The primer syntax allows the square parenthesis ([]) to specify an alternative and the dot (.) to replace the N for any nucleotide. The degenerated code is not allowed. Make sure that the format button shows the correct format. EMBL ID or AC. EST ID or AC. Paste your sequence here:. Or ID or accession number). Back to the Top.

3

BoxShade Server

http://ch.embnet.org/software/BOX_form.html

Pretty Printing and Shading of Multiple-Alignment files. This server uses version 3.21 of BOXSHADE, written by K. Hofmann and M. Baron. BOXSHADE. Is in the public domain and available from Source Forge http:/ sourceforge.net/projects/boxshade/. Takes a multiple-alignment file in either GCG's MSF-format or Clustal ALN-format. Output can be created in the following formats:. Postscript/EPS (using shaded background). RTF old (using colors). RTF new (using shaded background). And see the FAQ list.

4

COILS Server

http://ch.embnet.org/software/COILS_form.html

Prediction of Coiled Coil Regions in Proteins. COILS is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that the sequence will adopt a coiled-coil conformation. COILS was described in:. Lupas, A., Van Dyke, M., and Stock, J. (1991). Predicting Coiled Coils from Protein Sequences,. Back to the Top.

5

LALIGN Server

http://ch.embnet.org/software/LALIGN_form.html

Find multiple matching subsegments in two sequences. This is William Pearson's. Program. A manual page for this program is available here. The lalign program implements the algorithm of Huang and Miller, published in Adv. Appl. Math. (1991) 12:337-357. This program is part of the FASTA package of sequence analysis program. Paste your two sequences in one of the supported formats. Into the sequence fields below. And press the Run lalign button. Choose the alignment method:. Global without end-gap penalty.

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cleanex.vital-it.ch

SIB-CleanEx Database

http://cleanex.vital-it.ch/index.html

Is a database which provides access to public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons. Expression Data Related Tools. Current release is based on Unigene database available on : 11 Jun 2008. Direct Access to CleanEx Individual Entries. Database by ID or GENE SYMBOL. Database by Target ID(see here. Browse CleanEx Target database. Shows t...

tcoffee.org

Notredame Lab Home Page - Comparative Bioinformatics

http://www.tcoffee.org/homepage.html

Welcome to the Comparative Bionformatics Group Homepage. Aka Notredame's lab) a research group of the Center for Genomic Regulation. A Multiple Sequence Alignment Package. Evaluation and filtering of multiple Sequence Alignments. Combination of Multiple Sequence Alignment Packages. Combination of Sequences and Structures. RNA Multiple Sequence Alignment. RNA Multiple Sequence Alignment Using Structural Information. Aligns homologous promoter regions. T-RMSD Structure based clustering. My PhD [ ps.

ucsdbglab.org

UCSD Biochemical Genetics Links

http://www.ucsdbglab.org/links.asp

UCSD Biochemical Genetics and Metabolomics Laboratory. A Program in the Division of Genetics. University of California San Diego. Biochemical Genetics- Links to Other Sites. The American College of Medical Genetics. The Society for Study of Inborn Errors of Metabolism. National Society of Genetics Counselors. National Organization for Rare Disorders. OnLine Mendelian Inheritance in Man. The on-line version of McKusick's classic compendium. National Center for Biotechnology Information. St Louis Universit...

prometa.kuleuven.be

.:: ProMeta ::. - Links

http://www.prometa.kuleuven.be/en/links.htm

Skip to: page content. Links on this page. ProMeta - Interfacultary Center for Proteomics and Metabolomics. Contact or reach us. University Hospital of Leuven. Faculty of Agricult. and Appl. Biol. Sciences. Faculty of Pharmaceutical Sciences. HUPO Proteomics Standards Initiative. The Global Proteome Machine Organization.

cleanex.vital-it.ch

SIB-CleanEx Database

http://cleanex.vital-it.ch/webmail.html

Is a database which provides access to public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons. Please mail us at Viviane.Praz@unil.ch. Or Philipp.Bucher@epfl.ch. Back to CleanEx Main Page.

kor.intronbio.com

iNtRON Bio technology co,.Ltd

http://kor.intronbio.com//link/default.asp

DNA, RNA, Protein등의 정보 Site. 국내등록 학회 Web Search. 국내 의료기관 Web Search. DNA, RNA, Protein등의 정보 Site. Gene, DNA, sequences - general. NDB - Nucleic acid database. GenBank at the National Center for Biotechnology Information. DDBJ - DNA Data Bank of Japan. GSBD-Genome Sequence Database at the National Center for Genome Resources. TGD - Tumor Gene Database. MPDB - Molecular probe database. OPD - Oligonucleotide Probe Database. RNA sequences - general. RDP - the Ribosomal Database Project. The Glucocorticoid Re...

dnasc.byu.edu

Resources

http://dnasc.byu.edu/Resources.aspx

The College of Life Sciences. DNA Sequencing Center Equipment. I llumina HiSeq 2500. In Rapid Mode generates 125-150Gb of sequence data (2x250) per lane of a 2 lane flow cell, or runs a single flow cell (8 lane flow cell) in High Output Run Mode and generates 62.5 Gb of sequence data (2x125) per lane. This machine can operate with twice this capacity in either Rapid Mode (2x2 lanes) or high output mode (2x8 lane). In high output mode it generates some 2 billion reads per flow cell. For the computational ...

bbcf.epfl.ch

BBCFResources < BBCF < TWiki

http://bbcf.epfl.ch/twiki/bin/view/BBCF/BBCFResources

Navigation within EPFL sites. Navigation within this site. Jump to search field. Jump to page content. Innovation and Tech Transfer. Press releases, Reflex, Flash. Architecture, Civil and Environmental Engineering. Materials Science and Engineering. Computer and Communication Sciences. Neuroscience Brain Mind and Blue Brain. Human and Social Science. Area and Cultural Studies. Innovation and Tech Transfer. Technology transfer, patents. Platforms and Core facilities. Paper in BMC Bioinformatics.

umlab.org

Um Laboratory - 홈페이지

http://www.umlab.org/sub05/sub01.php

Department of Physiology Yonsei University College of Medicine 50 Yonseiro,. 연세대학교 의과대학(Yonsei University College of Medicine). Cold Spring Harbor Protocols. Journal of Cell Biology. The Journal of Neuroscience. Nature Reviews in Neuroscience. Annual Reviews in Neuroscience. Current Opinions in Neuoroscience. Trends in Cell Biology. 분자생물학관련 (Molecular Biology Tools). NCBI (National Center for Biotechnology information). UCLA Behavioral Testing Core Facility.

biokemia.lap.hu

Biokémia - Szekvencia illesztés, hasonlósági keresés, programcsomagok. A legjobb válaszok profiktól.

http://biokemia.lap.hu/szekvencia_illesztes_hasonlosagi_kereses_programcsomagok/11299382

Legyen a Startlap a kezdőlapom. Szekvencia illesztés, hasonlósági keresés, programcsomagok. Http:/ biokemia.lap.hu/. Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Embnet (BLAST, szekvencia illesztés). SRS7, transzmembrán régió detekció, DNS-en kódoló régió keresés. Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! FASTA (University of Virginia). Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz!

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ch.embnet.org

EMBnet node Switzerland

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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