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dnGASP
RGASP3/dnGASP | Bioinformatics and Genomics @ CRG
http://big.crg.cat/rgasp_dngasp
Computational Biology of RNA Processing. The "Sequence Mapping and Assembly Assessment Project. SMAAP) RGASP3/dnGASP" is a collaborative effort among researchers to compare and evaluate methods and strategies for de novo genome assembly and RNASeq read alignment using data from 2. Two common datasets will be made available to the participants in early November:. Assembly: simulated sequence reads from a high-throughput sequencing platform de. Check the web sites above for definitive submission dates).
GENCODE - RGASP 1/2 Guidelines
http://www.gencodegenes.org/rgasp/rgasp3.html
How to Access Data. RGASP Round 3: RNA-seq Read Alignment Assessment. One of the lessons learned from rounds 1 and 2 of the project was that the initial step of aligning the reads has a major influence on the quality of gene predictions produced. Therefore, a third round of RGASP was conducted to focus primarily on read mapping to the genome. The project was related to the "Sequence Mapping and Assembly Assessment Project ( SMAAP. And RNA-seq read alignment ( RGASP3. Goal of RGASP 3. Paired-end Illumina ...
GAGE
http://gage.cbcb.umd.edu//index.html
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been published in the journal. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Why do we need GAGE? How much sequencing coverage do I need for my genome project? Here are some differences:. We will c...
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dnGASP
Skip to main navigation. Skip to first column. Skip to second column. Simulated Genome Released to Participants. Friday, 25 March 2011 15:22. For the purpose of self-evaluation, we are providing a link to the simulated genome sequence. You may download the genome here. Last Updated on Friday, 25 March 2011 15:31. Friday, 05 November 2010 23:46. An initiative of Biocat with support from la Caixa Welfare Projects, and supported by additional funds from READNA. This web portal is dedicated to providing the ...
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Skip to main content. Centre nacional d'anàlisi genòmica. Centro nacional de análisis genómico. Mission, vision and values. Quality Policy and Certificates. Bioinformatics Development and Statistical Genomics Team. Genome Assembly and Annotation Team. Single Cell Genomics Team. 7th CNAG Symposium on Genome Research: Personalized Medicine. Pooling resources for diagnostics of the future. Genome architecture’s surprising role in cell fate decisions. New great ape species described, the Tapanuli orangutan.
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CNAG — Home
Our mission is to carry out projects in genome analysis that will lead to significant improvements in people’s. Health and quality of life, in collaboration with the Catalan, Spanish, European and International. Research and clinical community. Inbreeding among mountain gorillas may help save the species. Tomàs Marquès-Bonet, researcher at the CNAG and the IBE is one of the principal investigators of this international study published in Science. Spanish Genomics is consolidated in Barcelona. This editio...
CNAG — Home
Our mission is to carry out projects in genome analysis that will lead to significant improvements in people’s. Health and quality of life, in collaboration with the Catalan, Spanish, European and International. Research and clinical community. Inbreeding among mountain gorillas may help save the species. Tomàs Marquès-Bonet, researcher at the CNAG and the IBE is one of the principal investigators of this international study published in Science. Spanish Genomics is consolidated in Barcelona. This editio...
CNAG — Home
Our mission is to carry out projects in genome analysis that will lead to significant improvements in people’s. Health and quality of life, in collaboration with the Catalan, Spanish, European and International. Research and clinical community. Inbreeding among mountain gorillas may help save the species. Tomàs Marquès-Bonet, researcher at the CNAG and the IBE is one of the principal investigators of this international study published in Science. Spanish Genomics is consolidated in Barcelona. This editio...