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EPD The Eukaryotic Promoter Database

Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew - H. sapiens. EPDnew - M. musculus. EPDnew - D. melanogaster. EPDnew - D. rerio. EPDnew - C. elegans. EPDnew - A. thaliana. Is a new collection of experimentally validated promoters in human, mouse, D. melanogaster. 21239 promoters for the mouse ( M. musculus. 15073 promoters for the D. melanogaster. 10728 promoters for the zebrafish ( D. rerio. 7120 promoters for the worm ( C. elegans. And 10229 promoters for the A. thaliana. Dreos, R., Am...

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EPD The Eukaryotic Promoter Database | epd.vital-it.ch Reviews
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Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew - H. sapiens. EPDnew - M. musculus. EPDnew - D. melanogaster. EPDnew - D. rerio. EPDnew - C. elegans. EPDnew - A. thaliana. Is a new collection of experimentally validated promoters in human, mouse, D. melanogaster. 21239 promoters for the mouse ( M. musculus. 15073 promoters for the D. melanogaster. 10728 promoters for the zebrafish ( D. rerio. 7120 promoters for the worm ( C. elegans. And 10229 promoters for the A. thaliana. Dreos, R., Am...
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1 eukariotic promoter database
2 computational cancer genomics
3 expasy
4 epfl
5 access epdnew
6 h sapiens
7 m musculus
8 d melanogaster
9 d rerio
10 c elegans
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EPD The Eukaryotic Promoter Database | epd.vital-it.ch Reviews

https://epd.vital-it.ch

Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew - H. sapiens. EPDnew - M. musculus. EPDnew - D. melanogaster. EPDnew - D. rerio. EPDnew - C. elegans. EPDnew - A. thaliana. Is a new collection of experimentally validated promoters in human, mouse, D. melanogaster. 21239 promoters for the mouse ( M. musculus. 15073 promoters for the D. melanogaster. 10728 promoters for the zebrafish ( D. rerio. 7120 promoters for the worm ( C. elegans. And 10229 promoters for the A. thaliana. Dreos, R., Am...

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1

EPD The Eukaryotic Promoter Database

https://epd.vital-it.ch/promoter_elements.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. Published base frequency tables and weight matrices:. Motif found in D. melanogaster. Bucher, P (1990). Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoters. J. Mol. Biol. 212, 563-578. Promoter element HMMs derived from EPD release 68 (September 2001):. TATA-box HMM trained from 900 unrelated general promoter sequences:. Derived from release 54 (March 1998).

2

EPD The Eukaryotic Promoter Database

https://epd.vital-it.ch/documents.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew assembly pipeline for Homo sapiens. List of genome assemblies used in EPD. List of alternative promoters. Groups of homologous promoters. Last update Aug. 2015. Swiss Institute of Bioinformatics. Back to the Top.

3

EPD The Eukaryotic Promoter Database

https://epd.vital-it.ch/drosophila/drosophila_database.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew, the Drosophila melanogaster. Fruit-fly) curated promoter database. UCSC known genes (30-Jun-2013). Based on data from:. ModENCODE CAGE data downloaded from GEO. Promoter assembly pipeline description. Promoter Selection and Anaysis tools. Promoter subset selection based on EPD-supplied annotation. Extract DNA motif positions near transcription start sites. Example: extract coordinates of CCAAT-boxes located betw...

4

EPD The Eukaryotic Promoter Database

https://epd.vital-it.ch/EPDnew_select.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. Use this tool to select all promoters. Leaving all 'Optional criterias' blank) or restrict them based on all or some of their genomic contexes (such as presence of core promoter elements) or expression levels. After selection, you can download them in various format (for example in FASTA, BED, etc.) or use them to perform further analysis such as motif enrichment/search and chromatin status. Average expression of at least.

5

EPD The Eukaryotic Promoter Database

https://epd.vital-it.ch/EPD_database.php

Registrations are now open! Swiss Institute of Bioinformatics. SRS access to EPD. The Eukaryotic Promoter Database. Current version is based on EMBL 128. EPD database is accessible in different ways: (1) using the input form in the header, searching for single gene symbol, gene description or ENSEMBL / RefSeq gene IDs; (2) using the download page. For selecting specie-specific promoters and downloading them in various formats or (4) through an ftp website. Last update Aug. 2015. Back to the Top.

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ant-city.com ant-city.com

蚂蚁城邦-生物医药网址导航

http://www.ant-city.com/db/nucleic.html

genome.jp genome.jp

DBGET Search

http://www.genome.jp/dbget

Is an integrated database retrieval system for major biological databases, which are classified into five categories:. 1 KEGG databases in DBGET. 2 Other DBGET databases. 3 Searchable databases on the Web. Used as Web resources. 4 Link-only databases on the Web. 1 KEGG Databases in DBGET (19 1 databases). Gene catalogs in high-quality genomes. Gene catalogs in draft genomes. Gene catalogs in metagenomes. 2 Other DBGET Databases (20 databases). NCBI Reference Sequence Database. Protein domains and families.

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ChIP-Seq

http://ccg.vital-it.ch/chipseq

Registrations are now open! Swiss Institute of Bioinformatics. Access to ChIP-Seq Tools. Access to ChIP-Seq Data. Access to other CCG Tools. ChIP-Seq on Amazon Cloud. 24-03-2016 - New dataset for hg19 (andersson14): H3K4me1 and H3K27ac in several blood cell types. H3K4me1 and H3K27ac maps for a number of major human blood cell types (CD4, CD8, CD19 and CD56). Data is from Andersson et al., 2014. More information about this serie can be found here. The source code is available on. Last update 15 Mar 2016.

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SSA

http://ccg.vital-it.ch/ssa

Registrations are now open! Swiss Institute of Bioinformatics. Access to SSA Tools. Access to other CCG Tools. 15-08-2015 - Improvements on the SSA server navigation tools. Allow upload of SGA and BED formatted files, allow upload via URL, and offer the possibility to specify a genome release. The Drosophila OnTheFly 2014 PWM collection has been added to the server menus. And (iv) the optimization of a weight matrix description of a locally over-represented sequence motif ( PatOp. Utility can be used to ...

hnsci.net hnsci.net

生物数据 | 生物医药科研网

http://www.hnsci.net/link/data

Skip to main content. Database of Genomic Viriants. PIR (Protein Information Resourse). Index to Organism Names (ION). Hacked By Anonymous Bulacan. Hacked By Anonymous Bulacan. EXPECT MORE FROM US!

expasy.org expasy.org

ExPASy: SIB Bioinformatics Resource Portal - Categories

http://www.expasy.org/genomics

Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. No support from the ExPASy Team). Bull; collection of eukaryotic promoters • [more]. Bull; Hierarchical catalog of eukaryotic orthologs • [more]. Bull; annotations of regulatory sites • [more]. Bull; SwissRegulon is a database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intu...Bull;...

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USEFUL LINKS TO EXTERNAL MOLECULAR AND CELL BIOLOGY ONLINE RESOURCES

http://www.molbiotools.com/usefullinks.html

DNA Sequence Editor ( WebDSV. Random Gene Set Generator. Nucleotide and protein sequences. Non-coding RNA databases and tools. Protein function and interactions. RNA secondary structure prediction. In silico molecular cloning. Online protocols and forums. Nucleotide and protein sequences. Nucleotide sequence database at NCBI. European Nucleotide Archive at EMBL-EBI. DNA Data Bank of Japan. A resource of protein sequence and functional information. A gene database at NCBI. A transcript database at NCBI.

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PWMTools

http://ccg.vital-it.ch/pwmtools

Registrations are now open! Swiss Institute of Bioinformatics. Access to other CCG Tools. 13-08-2015 - Improvements on PWMTools. Most of the back-end software of the Word Analysis tool ( MSeq. Has been replaced by a faster implementation using C and C . Is a Web interface for P. Model generation and evaluation. Includes the following tools:. Which is a Web-based software pipeline used to derive TFBS models from DNA sequences such as HT-SELEX and MITOMI-seq. Last update 9 Feb 2016. Back to the Top.

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EPD The Eukaryotic Promoter Database

Swiss Institute of Bioinformatics. SRS access to EPD. EPDnew - H. sapiens. EPDnew - M. musculus. EPDnew - D. melanogaster. EPDnew - D. rerio. EPDnew - C. elegans. EPDnew - A. thaliana. Is a new collection of experimentally validated promoters in human, mouse, D. melanogaster. 21239 promoters for the mouse ( M. musculus. 15073 promoters for the D. melanogaster. 10728 promoters for the zebrafish ( D. rerio. 7120 promoters for the worm ( C. elegans. And 10229 promoters for the A. thaliana. Dreos, R., Am...

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EPD100 - home

Skip to main content. Session 6 Project 1 DUE. Session 10 Project 2 DUE. Unit Project 1 Rubric. Unit Project 2 Rubric. Introduction To Web Technologies For Educators. Email: lthomas@emerson.k12.nj.us. Office: located in Emerson High School Media Center. Office hours: M-F 2:30 - 3:30 PM; also available by appointment. No text. We will utilize online articles and other resources available on the internet. There are no prerequisites for this course. Creating a Personal Learning Network (PLN) Course number:.