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AtProbe: Arabidopsis thaliana Promoter Binding Element Database
AtProbe: Arabidopsis thaliana Promoter Binding Element Database. Michael Hoffman and Michael Q. Zhang Welcome to AtProbe, the Arabidopsis thaliana promoter binding ...
http://exon.cshl.org/cgi-bin/atprobe/atprobe.pl
ESEfinder: a web resource to identify exonic splicing enhancers
Here we describe the implementation of the motif-scoring matrices in a web-based program called ESEfinder (release 2.0: http://exon.cshl.edu/ESE/) which allows scanning ...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC169022/
ESEfinder: a Web resource to identify exonic splicing enhancers
called ESEfinder (release 2.0: http://exon.cshl.edu/ESE/) which allows scanning of nucleotide sequences to predict putative ESEs responsive to the human SR proteins SF2 ...
http://rulai.cshl.edu/reprints/ESEfinder.pdf
ESEfinder: A web resource to identify exonic splicing enhancers.
ESEfinder (http://exon.cshl.edu/ESE/) is a web-based resource that facilitates rapid analysis of exon sequences to identify putative ESEs responsive to the human SR ...
http://www.ncbi.nlm.nih.gov/pubmed/12824367
PLACE, Plant Cis-acting Regulatory DNA Elements
AtProbe (http://exon.cshl.org/cgi-bin/atprobe/atprobe.pl) The Arabidopsis thaliana promoter binding element database, an aid to find binding elements and check data ...
http://www.dna.affrc.go.jp/PLACE/
Sixteen novel hemophilia A causative mutations in the first ...
Analysis of ESEs (Exonic Splicing Enhancers) was performed using ESE-Finder software on-line (http://exon.cshl.edu/ESE/). The GeneSplicer software was used to seek and ...
http://www.haematologica.org/content/92/6/842.full
Michael M. Hoffman
<http://exon.cshl.org/cgi-bin/atprobe/atprobe.pl>. Leadership and committee positions Chair, Large-scale Integration Task Group, ENCODE Analysis Working Group,
http://noble.gs.washington.edu/~mmh1/cv/michael-hoffman-cv.pdf
MicroRNA promoter element discovery in Arabidopsis
ment databases: AtProbe (http://exon.cshl.org/cgi-bin/atprobe/ atprobe.pl) and AGRIS (Davuluri et al. 2003). The subsequent search for binding sites based on these PWMs was ...
http://www-stat.wharton.upenn.edu/~stjensen/papers/shanejensen.micro06.pdf
A novel type 2A von Willebrand factor mutation located at the last ...
... to the skipping of that exon, results in the destruction of an ESE for SRp40 (analysis done using the web-based program ESEfinder 39 http://exon.cshl ...
http://bloodjournal.hematologylibrary.org/content/104/9/2739.full
Pre-mRNA splicing and human disease - Genes & Development
The consensus sequences derived from these experiments were used to develop an ESE prediction program (athttp://exon.cshl.org/ESE), which has subsequently been used to ...
http://genesdev.cshlp.org/content/17/4/419.full
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