Bujnicki lab. Our group is involved in theoretical and experimental research on nucleic acids and proteins. The current focus is on RNA sequence-structure-function relationships (in particular 3D modeling), RNA-protein complexes, and enzymes acting on RNA.
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Bujnicki lab - Home | genesilico.pl Reviews
https://genesilico.pl
Bujnicki lab. Our group is involved in theoretical and experimental research on nucleic acids and proteins. The current focus is on RNA sequence-structure-function relationships (in particular 3D modeling), RNA-protein complexes, and enzymes acting on RNA.
Modomics - A Database of RNA Modifications
Are two complementary resources whichpresent RNA metabolism at different levels. While MODOMICS presents RNA modification pathways on the level of nucleosides, RNApathwaysDB deals with RNA metabolism with respect to whole RNA molecules. Our ultimate goal is to integrate these databases, however at the moment the users are invited to consult both of these complementary resources, depending on their needs and interests. Contribute: Everyone is welcome to give feedback concerning Modomics database.
Bujnicki lab - Home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. We developed a method for 3D homology modeling of RNA structures. It requires a pairwise sequence alignment and a structu...
Bujnicki lab - Home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. We developed a method for 3D homology modeling of RNA structures. It requires a pairwise sequence alignment and a structu...
eurasnet-workshop.genesilico.pl
Bujnicki lab - Home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. We developed a method for 3D homology modeling of RNA structures. It requires a pairwise sequence alignment and a structu...
Bujnicki lab - Home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. We developed a method for 3D homology modeling of RNA structures. It requires a pairwise sequence alignment and a structu...
IIMCB: Bioinformatics Laboratory, Asia
IIMCB: Bioinformatics Laboratory, Asia
MetalionRNA
A metal ion binding site predictor. MetalionRNA is a novel bioinformatic method for predicting metal-binding sites in RNA structures.
REPAIRtoire - a database of DNA repair pathways
Click here to login. Or here to register. A database of DNA repair pathways. REPAIRtoire contains components involved in the repair mechanisms of all kinds of cellular DNA lesions. In this version, repair pathways from H.sapiens. Are contained, together with their protein components and molecular events that trigger those pathways. You can now browse the following sections:. If you use REPAIRtoire in your research, please cite this article in your publication:. Lesiak J, Osinska E, Rother K, Bujnicki JM.
genesilico.pl
Welcome to GeneSilico Toolkit 2.0
http://www.genesilico.pl/toolkit
Submit protein sequence or structure). Submit protein structure and experimental data). Your saved job template. Report a problem [eng/pl]. The page layout is optimized for Mozilla, Firefox and Konqueror web browsers. We are still working to fix rendering issues in Internet Explorer and Opera.
NPDock
http://www.genesilico.pl/NPDock
NPDock docks protein (green) to nucleic acids (red). Example: Trm14 (cartoon) tRNA (sticks). Example: Trm14 (cartoon) tRNA (cartoon). NPDock (Nucleic acid-Protein Dock) is a web server for modeling of RNA-protein and DNA-protein complex structures. It combines (1) GRAMM for global macromolecular docking, (2) scoring with a statistical potential, (3) clustering of best-scored structures, and (4) local refinement. NPDock a web server for protein-nucleic acid docking. Nucleic Acid Research (Web Server Issue).
Bujnicki lab - PROTMAP2D
http://www.genesilico.pl/software/stand-alone/protmap2d
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
GDFuzz3D: protein 2D map to 3D structure retrieval service
http://www.genesilico.pl/gdserver/GDFuzz3D
GDFuzz3D: protein 2D map to 3D structure retrieval service. Fuzzy or binary contact map (CASP RR format, plain text):. Input should be in plain text, CASP RR format, see example input. Input text should contain amino acid sequence entries (single-letter). Amino acid records can be raw or preceded by SEQRES tag (maximum number of amino acids per row: 50). No more than 400 amino acids, only standard 20 amino acid letters are allowed. GDFuzz3D is designed to work on predicted maps for single-domain proteins.
Bujnicki lab - STAND-ALONE
http://www.genesilico.pl/software/stand-alone
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. RNAmap2D is a software tool for calculation of contact and distance maps based on user-defined criteria, and to some extent, ...
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REPAIRtoire - a database of DNA repair pathways
http://repairtoire.genesilico.pl/papers
Click here to login. Or here to register. PAGE 1 of 153. Click on a column name to sort. A Leu554-to-Pro substitution completely abolishes the functional complementing activity of the Fanconi anemia (FACC) protein. A Large-scale genetic association study of esophageal adenocarcinoma risk. A DNA-topoisomerase-II-binding protein with eight repeating regions similar to DNA-repair enzymes and to a cell-cycle regulator. A DNA-activated protein kinase from HeLa cell nuclei. A 29425 kb segment on the left arm o...
REPAIRtoire - a database of DNA repair pathways
http://repairtoire.genesilico.pl/proteins
Click here to login. Or here to register. Click on a column name to sort. Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [ Homo sapiens. Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 [ Homo sapiens. DNA-(apurinic or apyrimidinic site) lyase, Apurinic-apyrimidinic endonuclease 1, APEX nuclease, Protein REF-1.,. DNA-(apurinic or apyrimidinic site) lyase 2, Apurinic-apyrimidinic endonuclease 2, APEX nuclease 2, APEX nuclease-like 2, AP endonuclease XTH2.,. AlkB [ Escherichia coli. Cell ...
REPAIRtoire - a database of DNA repair pathways
http://repairtoire.genesilico.pl/pathways
Click here to login. Or here to register. Not yet annotated by REPAIRtoire. Not available in a given organism. Click here to login. Or here to register.
Modomics - A Database of RNA Modifications
http://modomics.genesilico.pl/sequences
Contribute: Everyone is welcome to give feedback concerning Modomics database. If you have any advice or suggestions for corrections or improvements, please contact: mmika@genesilico.pl.
The Eric Python IDE - Testimonials
http://eric-ide.python-projects.org/eric-testimonials.html
On this page you will find testimonials of eric users. Please feel free to send your statements for inclusion on this page. The Eric IDE has been a game changer for bristoSOFT. The performance rivals a natively compiled program. We have not noticed any difference in speed compared to other Python IDE's. Eric is feature rich and enjoyable to use. With a world class manual it would be a all out winner! Kirk A. Jackson,. We, the Climpact team, use the eric3 IDE every day for developing our climate tools....
Modomics - A Database of RNA Modifications
http://modomics.genesilico.pl/papers
Get list of all PMID's]. Click on a column name to sort. PubMed ID / DOI. Giardia lamblia RNA cap guanine-N2 methyltransferase (Tgs2). Identification of a novel gene encoding a flavin-dependent tRNA:m5U methyltransferase in bacteria- evolutionary implications. A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA. Substrate binding analysis of the 23S rRNA methyltransferase RrmJ. Identification of yeast tRNA Um(44) 2-O-methyltransferase (Trm44) and de...
Modomics - Building Blocks
http://modomics.genesilico.pl/building_blocks
N6,N6,2-O-trimethyladenosine (BB2). Contribute: Everyone is welcome to give feedback concerning Modomics database. If you have any advice or suggestions for corrections or improvements, please contact: mmika@genesilico.pl.
Center for non-coding RNA in Technology and Health - Previous
http://rth.dk/events/previous.php
Seminar: High-performance grammar-based stream processing. By Fritz Henglein (DIKU). The seminar will take place July 7th, 13.15-14.00 at University of Copenhagen, SUND/SCIENCE, Grønnegårdsvej 7, 1st floor library, Frederiksberg C. Seminar: Genomic selection status and an outlook to the future. PhD Defense: Caroline Junker Mentzel. Everybody is welcome. Registration is not necessary. PhD Defense: Anne Wenzel. Everybody is welcome. Registration is not necessary. PhD Defense: Christian Garde. Mechanisms an...
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GENESIKA
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GENESIKA (Georg) - DeviantArt
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武汉市晶赛生物工程技术有限公司(武汉淅玛生物技术有限公司)-RNAi专业技术公司
Welcome to Genesil Technologies...
Welcome to Genesil Technologies. GeneSil Technologies is a vision which was conceptualised in 1998. Founded with the goals of manufacturing the highest quality Silicone Softeners and providing the best service possible, the company began to thrive. As time went by, we set the pace with new products, designs and innovations that continue to lead the industry. Design by Dream Black Ad and Webs.
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Bujnicki lab - Home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. RNA Bricks is a database of RNA 3D structure motifs and their contacts, both with themselves and with proteins. The database provides structure-quality score annotations and tools for the RNA 3D structure search and comparison. We developed a method for 3D homology modeling of RNA structures. It requires a pairwise sequence alignment and a structu...
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New York Life
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genesim.com - This domain may be for sale!
Find the best information and most relevant links on all topics related to genesim.com. This domain may be for sale!
Welcome to the Blankenship Family Web Pages
Welcome to the Blankenship Family Web Pages. This deer was checking us out at our New Mexico rented vacation home were we spent a week in late June, 2011. We fed the deer during our visit and this one came to see if lunch was served.
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