genome.jp
GenomeNetGenomeNet is a Japanese network of database and computational services for genome research and related research areas in biomedical sciences.
http://www.genome.jp/
GenomeNet is a Japanese network of database and computational services for genome research and related research areas in biomedical sciences.
http://www.genome.jp/
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GenomeNet | genome.jp Reviews
https://genome.jp
GenomeNet is a Japanese network of database and computational services for genome research and related research areas in biomedical sciences.
CYORF Cyanobacteria Gene Annotation Database
Cyanobacteria Gene Annotation Database. Is a vehicle by which the community of cyanobacteriologists collectively annotates available genomes from cyanobacteria. In this way, the genomes are curated by experts from the field as a whole. We welcome anyone interested to join in the effort. If you know something that's not in this database, we need your insight! For more on the history. Of CYORF, click here. To expand the capabilities of this site, click here. To join the annotation effort. For the cyanobact...
BSORF Top Page
Search against genome sequence. Search against coding sequences. Last updated: January 18, 2006. This site is maintained by GenomeNet. For the Bacillus subtilis. Research community in Japan.
genome.jp
KEGG - Table of Contents
http://www.genome.jp/kegg/kegg2.html
KEGG - Table of Contents. Dagger; / FASTA. Dagger; / SUBCOMP. KEGG is developed by Kanehisa Laboratories. See Kanehisa et al. (2016). For updates of KEGG. Dagger; Developed and maintained by Kyoto University Bioinformatics Center as part of its GenomeNet service. KEGG for individual genomes. The list of currently available organisms. KEGG for pangenomes or genome comparison/combination. The list of KEGG organisms grouped into species. Enter multiple organism codes:. Genome and metagenome combination).
KEGG GENES Database
http://www.genome.jp/kegg/genes.html
Molecular building blocks of life in the genomic space. Is a collection of gene catalogs for all complete genomes (see release history. Generated from publicly available resources, mostly NCBI RefSeq and GenBank. They are subject to SSDB computation and KO assignment (gene annotation) by KOALA tool. KEGG DGENES and MGENES are supplementary gene catalogs for draft genomes and metagenomes, which are given automatic KO assignment by BlastKOALA. Complete genomes with KOALA and manual annotations. Prokaryotei...
KEGG PATHWAY Database
http://www.genome.jp/kegg/pathway.html
Wiring diagrams of molecular interactions, reactions, and relations. Is a collection of manually drawn pathway maps. Representing our knowledge on the molecular interaction and reaction networks for:. 2 Genetic Information Processing. 3 Environmental Information Processing. And also on the structure relationships (KEGG drug structure maps) in:. Basic pathway mapping tool. Advanced pathway mapping tool. Selected pathway map coloring tool. 10 Global and overview maps. Biosynthesis of secondary metabolites.
KEGG: Kyoto Encyclopedia of Genes and Genomes
http://www.genome.jp/kegg
KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. July 1, 2016). For new and updated features. KEGG RPAIR to be discontinued. Main entry point to the KEGG web service. KEGG modules [ Module list.
Multiple Sequence Alignment - CLUSTALW
http://www.genome.jp/tools/clustalw
Multiple Sequence Alignment by CLUSTALW. With labels) below (copy and paste):. Support Formats: FASTA (Pearson), NBRF/PIR, EMBL/Swiss Prot, GDE, CLUSTAL, and GCG/MSF. Or give the file name containing your query. Number of Top Diagonals:. Note that only parameters for the algorithm specified by the above "Pairwise Alignment" are valid.). Hydrophilic Residues for Proteins:. Delimited by whitespaces) below:. Kyoto University Bioinformatics Center.
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KEGG Mapping
http://www.kegg.jp/kegg/kegg1b.html
KEGG mapping as a set operation. Tools). Currently there are four types of mapping operations available in KEGG:. The fourth type may involve molecular or non-molecular datasets (orthologs, modules, and organisms) and the network dataset (taxonomic tree). Here is a summary of how the knowledge base of KEGG pathway maps and BRITE functional hierarchies is extended by the KEGG mapping set operations. 1 Organism-specific pathway/brite/module datasets. 3 Disease dataset with gene/genome information. On top o...
KEGG Pathway Maps
http://www.kegg.jp/kegg/kegg3a.html
The KEGG pathway map is a moleculalr interaction/reaction network diagram represented in terms of the KEGG Orthology (KO) groups, so that experimental evidence in specific organisms can be generalized to other organisms through genomic information. Each map is manually drawn with in-house software called KegSketch, which generates the KGML file. This file is an SVG file containing graphics objects that are associated with KEGG objects (see KEGG object identifiers. Convention of map number prefix. Rn - Re...
KEGG Overview
http://www.kegg.jp/kegg/kegg1a.html
1 Genomes to Biological System. The KEGG database has been in development by Kanehisa Laboratories. Since 1995, and is now a prominent reference knowledge base for integration and interpretation of large-scale molecular data sets generated by genome sequencing and other high-throughput experimental technologies. 2 The KEGG Database. KEGG modules of functional units. KEGG Orthology (KO) groups. KEGG organisms with complete genomes. Gene catalogs of complete genomes. Sequence similarity database for GENES.
KEGG Objects
http://www.kegg.jp/kegg/kegg3.html
Are biological entities from molecular to higher levels that are represented as database entries in KEGG, such as genes and protein, small molecules, reactions, pathways, diseases and drugs. The identifier of each database entry is generally in the form of. Where "db" is the database name and "entry" is the entry name or the accession number (see DBGET. Is thus equivalent to dr:D01441. Map, ko, ec, rn, (org). Br, jp, ko, (org). M, (org) M. Crude drug, etc. Where "org" is the KEGG organism code and "gene"...
KEGG Color Codes
http://www.kegg.jp/kegg/kegg1c.html
Used in global pathway maps and genome maps). Metabolism of other amino acids. Glycan biosynthesis and metabolism. Metabolism of cofactors and vitamins. Metabolism of terpenoids and polyketides. Biosynthesis of other secondary metabolites. Xenobiotics biodegradation and metabolism. Reference pathway (KO, EC, Reaction). Disease gene and drug target. Pathway mapping of two organisms (global/overview maps). Organisms 1 and 2. Pathway mapping of multiple organisms (regular maps). Last updated: August 5, 2016.
Searching KEGG
http://www.kegg.jp/kegg/kegg1d.html
The KEGG database is made accessible in two formats. One is the flat-file format for use in simple searches by the DBGET database retrieval system. The other is the relational database format for more sophisticated queries in selected databases. Has been developed as the backbone retrieval system for the GenomeNet and KEGG services (see the history of development. DBGET has two basic commands:. Bget - to retrieve 'db:entry'. Bfind - to find 'db:entry's by keyword search. ENTRY, NAME, and entire text.
KEGG - KegTools
http://www.kegg.jp/kegg/download/kegtools.html
Are desktop applications that run on the Mac OS X, Windows, and Linux platforms with Java 1.6 or newer. The following three applications are freely available, but they are no longer supported. Java application for browsing BRITE hierarchy files. KegHier 1.1.1 (December 22, 2011) [ zip. Java application for microarray data analysis. KegArray 1.2.4 (October 16, 2009) [ zip. Java application for drawing compound and glycan structures. KegDraw 0.1.14beta (December 22, 2011) [ zip.
生物物理 緒方研
http://www.biophys.kyoto-u.ac.jp/ogata.php
Division of Biological Sciences. Graduate School of Science. ロマン ブラン マチュー 助教. 研究テーマ 最新の大規模生命データを通して、分子から地球環境までの視点で、生命の多様性 生物機能の発現と進化を解明するための理論的 計算機科学的研究を行っています。 なぜ、これほ巨大なウイルスはいるのか その進化の原動力は 彼らの自然界での役割は こうした疑問に答えることを目指しています。 具体的には、薬の副作用 代謝経路 マラリア原虫の免疫回避 マイクロRNAの機能と広範な生命現象を研究対象としています。 Email: ogata(at-mark)kuicr.kyoto-u.ac.jp. Email: goto(at-mark)kuicr.kyoto-u.ac.jp. Email: roblanc(at-mark)kuicr.kyoto-u.ac.jp. Original design by G. Wolfgang. W3C XHTML 1.0. W3C CSS 2.0.
Useful Links - ProSci LLC
http://www.prosciconsulting.com/useful-links.html
These portals were commonly used in past projects and assembled here for quick references by staff, clients and the public at large. Please feel free to forward your suggestions, we strive to update relevant links on a quarterly basis. Common search engines and wiki for protein identification. NCBI Entrez Cross-Database Search. National Human Genome Research Institute. Exome Aggregation Consortium (beta). Protein analysis and structure prediction. Expert Protein Analysis System. Protein Data Base (PDB).
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バイオインフォマティクス講座 ゲノム情報科学研究室
熊田研究室
研究目標 人間の認知や行動のメカニズムを生理学的 心理学的 脳科学的 工学的に解明するとともに、その成果を社会に還元します。 1階 130, 132, 134, 135室.
JGI Genome Portal - Home
Skip To Main Content. On August 11, 2015 the JGI computer systems will be undergoing maintenance and access to certain files and tools will be affected. Sorry for the inconvenience. Export Results To Excel. Without restrictions (superusers only). Download files and metadata are available at genome.jgi.doe.gov. Analysis are done at img.jgi.doe.gov. Download files are available at genome.jgi.doe.gov. Analysis are done by Fungal Program. Download files are available at genome.jgi.doe.gov. New on the portal:.
JGI Genome Portal - Home
Skip To Main Content. For additional search capabilities please use GOLD. Without restrictions (superusers only). Export Projects to Excel. Related genome resource and analysis tools are at http:/ jgi.doe.gov/fungi. Related genome resource and analysis tools are at img.jgi.doe.gov. Related genome resource and analysis tools are at http:/ phytozome.jgi.doe.gov. Non-public resource. Access can be restricted. For access information please email to Principal investigator. Group of Fungal Genomes. Visit JGI D...
Genome
At Genome TC, we understand that your company has unique needs. We strive to take what you know and find out where the gaps are in knowledge, skills, technology, and tools. Our purpose is to fill in those gaps to ensure that your company operates at the most efficient and profitable level possible. Contact Stay In Touch With Us. Don't Spam. Phone: 962 (6) 464 0293/4. Fax: 962 (6) 460 1585. Training and Consulting Services. Phone: 962 (6) 464 0293/4. Fax: 962 (6) 460 1585. Phone: 962 (6) 464 0293/4.
GenomeNet
Due to network maintenance, GenomeNet service will be unavailable during the following time. Tue, 17 Apr 2018 00:30-01:30 (JST). Sorry for the inconvenience. Integrated Database Retrieval System. Kyoto Encyclopedia of Genes and Genomes. REST service is available. Hosts of sequenced viruses. The Viral Proteomic Tree Server New! KEGG automatic annotation server. REST service is available. Possible reaction path computation. Similar reaction path search. Kyoto University Bioinformatics Center.
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Biopolymers Facility
DNA and RNA Prep. Welcome to the Biopolymers Facility. To place an order you must first. If you have any questions or comments,. Please feel free to email us at:. Website@genome.med.harvard.edu. Fluidigm C1 instrument enabling. Single cell genomic experiments. Illumina NextSeq 500 Sequencing. Fast high-throughput sequencing on the. NGS Automated Library Prep. Automated library prep available using. The Wafergen Apollo 324 instrument. Fast Next-Gen sequencing on the. Ultra high-throughput sequencing on the.
Center for Genomic Medicine
Last update: Nov 15,2013. Human Genetic Variation Database. Human Genetic Variation Database. Center for Genomic Medicine,.
UM Genome Browser Mirror Site
About the UM Genome Bioinformatics Site. Welcome to a version of the the UCSC Genome Browser. That is customized and maintained by the Kidd Lab. In the Department of Human Genetics at the University of Michigan Medical School. You'll find UCSC Genome Browser tracks along with those produced and compiled here at the UM. This site contains the reference sequence and working draft assemblies for the human, dog, mouse, gorilla, and chimpanzee genomes. Provides convenient access to the underlying database.
Kazusa Genome Resources
Kazusa DNA Research Institute. Kazusa DNA Research Institute released the web site and the data under the CC0. The information at this web site is provided by Kazusa DNA Research Institute (KDRI). While KDRI endeavors to keep the information up to date and correct, it dose not warrant or assume any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed.
