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Comparative Genomics Group

Welcome to the service area of the Chris Ponting group. We belong to the MRC Functional Genomics Unit. At the Department of Physiology, Anatomy and Genetics. Of the University of Oxford. Please see our portal pages. We have looked at complete genomes in several clades. You can browse and download the results for. Amniota (6 species: human, dog, mouse, monodelphis, platypus, chicken). Genepredictions by homoloy based on Guy Slater's exonerate. Gene predictions are available for browsing and download.

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Comparative Genomics Group | genserv.anat.ox.ac.uk Reviews

<META> DESCRIPTION

Welcome to the service area of the Chris Ponting group. We belong to the MRC Functional Genomics Unit. At the Department of Physiology, Anatomy and Genetics. Of the University of Oxford. Please see our portal pages. We have looked at complete genomes in several clades. You can browse and download the results for. Amniota (6 species: human, dog, mouse, monodelphis, platypus, chicken). Genepredictions by homoloy based on Guy Slater's exonerate. Gene predictions are available for browsing and download.

<META> KEYWORDS

1 comparative genomics group

2 services and tools

3 clade genomics

4 grape

5 gene predictions

6 group members

7 for more information

8 optic

9 rthologous and p

10 aralogous t

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Comparative Genomics Group | genserv.anat.ox.ac.uk Reviews

https://genserv.anat.ox.ac.uk

Welcome to the service area of the Chris Ponting group. We belong to the MRC Functional Genomics Unit. At the Department of Physiology, Anatomy and Genetics. Of the University of Oxford. Please see our portal pages. We have looked at complete genomes in several clades. You can browse and download the results for. Amniota (6 species: human, dog, mouse, monodelphis, platypus, chicken). Genepredictions by homoloy based on Guy Slater's exonerate. Gene predictions are available for browsing and download.

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genserv.anat.ox.ac.uk

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Gene predictions

http://genserv.anat.ox.ac.uk/genepredictions

We have developed a pipeline to predict genes based on homology using Guy Slater's exonerate. And predicted genes in various species. Gene predictions are available for browsing and download. Gene predictions in Drosophila species as part of the AAA Project. Also available for download are multiple alignments, orthologogy assignments used in. Heger and Ponting (in press) Evolutionary rate analyses of orthologues and paralogues from twelve Drosophila genomes. And Platypus ( Ornithorhynchus anatinus.

2

Gene predictions in mammals

http://genserv.anat.ox.ac.uk/genepredictions/mammals

Gene predictions in mammals. We have predicted genes in some mammalian genomes. Gene predictions in Monodelphis after refinement with orthology prediction. Gene predictions in Platypus after refinement with orthology prediction. Last Updated: Wednesday 4th July 2007, 10:39:26 GMT 2. Pages designed by Andreas Heger, maintained by Andreas Heger. Medical Research Council, 2007.

3

Group members

http://genserv.anat.ox.ac.uk/group/index_html

Please see our unit portal. For up-to-date information and our offical face to the world. Last Updated: Friday 20th April 2007, 16:53:46 GMT 2. Pages designed by Andreas Heger, maintained by Andreas Heger. Medical Research Council, 2007.

4

Amniota

http://genserv.anat.ox.ac.uk/clades/amniota

Clade genomics of Amniota. We have developed a pipeline for clade analysis. Orthologs are predicted between all pairs of genomes using Leo Goodstadt's PhyOP. Pairwise orthology predictions are then clustered and multiple alignments are built for each cluster using Robert Edgar's MUSCLE. Phylogenetic trees are estimated using Heng Li's TreeBeST. The result of this pipeline, clusters, trees and multiple alignments, can be accessed via these pages. The following species have been included in this analysis:.

5

OPTIC: Clade genomics web server

http://genserv.anat.ox.ac.uk/clades

OPTIC: Clade genomics web server. We have analyzed complete genomes in several clades. You can browse and download the results for. 5 mammals and chicken as outgroup. 3 Primates with mouse outgroup. Human, mouse, dog, opossum, platypus, chicken, songbird and tetroadon as outgroup. Last Updated: Friday 4th October 2013, 11:10:57 GMT 2. Pages designed by Andreas Heger, maintained by Andreas Heger. Medical Research Council, 2007.

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genenames.org

All tools | HUGO Gene Nomenclature Committee

http://www.genenames.org/tools/all

Use * to search with a root symbol (eg ZNF*). Old gene families archive. Statistics and downloads help. We have a selection of tools within the site that utilise the data that we store within our database. Below is a list of those tools with a brief description on the purpose of the tool. The HGNC Comparison of Orthology Predictions (HCOP). Search is a tool that integrates and displays the orthology assertions predicted for a specified human gene, or set of human genes, by EnsemblCompara.

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Comparative Genomics Group

Welcome to the service area of the Chris Ponting group. We belong to the MRC Functional Genomics Unit. At the Department of Physiology, Anatomy and Genetics. Of the University of Oxford. Please see our portal pages. We have looked at complete genomes in several clades. You can browse and download the results for. Amniota (6 species: human, dog, mouse, monodelphis, platypus, chicken). Genepredictions by homoloy based on Guy Slater's exonerate. Gene predictions are available for browsing and download.

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