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Gramene: A comparative resource for plants

Try typing a gene identifier, ontology term, pathway, or functional domain. Suggested terms are provided as you type:. See the distribution of results across all genomes:. Concise view of available information about a gene:. You can use to ask sophisticated questions about the genes across all of our databases concerning crop and model plant genomes:. What are the homologs of Arabidopsis thaliana's PAD4 gene in the Oryzeae? Pick Species from List. Browse and analyze metabolic and regulatory pathways.

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Gramene: A comparative resource for plants | gramene.org Reviews
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Try typing a gene identifier, ontology term, pathway, or functional domain. Suggested terms are provided as you type:. See the distribution of results across all genomes:. Concise view of available information about a gene:. You can use to ask sophisticated questions about the genes across all of our databases concerning crop and model plant genomes:. What are the homologs of Arabidopsis thaliana's PAD4 gene in the Oryzeae? Pick Species from List. Browse and analyze metabolic and regulatory pathways.
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Gramene: A comparative resource for plants | gramene.org Reviews

https://gramene.org

Try typing a gene identifier, ontology term, pathway, or functional domain. Suggested terms are provided as you type:. See the distribution of results across all genomes:. Concise view of available information about a gene:. You can use to ask sophisticated questions about the genes across all of our databases concerning crop and model plant genomes:. What are the homologs of Arabidopsis thaliana's PAD4 gene in the Oryzeae? Pick Species from List. Browse and analyze metabolic and regulatory pathways.

SUBDOMAINS

pathway.gramene.org pathway.gramene.org

Gramene: Plant Biochemical Pathway Database and Home to RiceCyc, MaizeCyc, BrachyCyc and SorghumCyc.

The pathways section in the Gramene databases is home for RiceCyc, MaizeCyc, BrachyCyc and SorghumCyc, the pathway databases for rice, maize, Bracypodium. And sorghum, respectively. It also provides mirrors of pathway databases from Arabidopsis. Tomato, potato, pepper, coffee, Medicago. SGN) In addition to search and browse functions, the database allows users to find genes mapped to respective reactions and pathways and draw inetrspecific comparison between the pathways. Pathways Browse and Other Options.

outreach.gramene.org outreach.gramene.org

Gramene Outreach

This is the Wiki for Gramene's Outreach. January 13-17, 2018 PAG XXVI Exhibit Booth for Agricultural Biological Database Outreach Consortium. June 24-28, 2017 Plant Genome Resources Outreach Booth at ASPB's Plant Biology 2017. January 14-18, 2017 PAG XXV Exhibit Booth for Agricultural Biological Database Outreach Consortium. Thursday, March 17, 2016 @ 3:30 PM - 4:30 PM - Hyatt Regency Jacksonville Riverfront, Daytona Room Gramene resources at the Maize Genetics Conference 2016. Plant Pathways - Reactome ...

news.gramene.org news.gramene.org

Gramene: A comparative resource for plants | Gramene

Skip to main content. A comparative genomics plant resource. Release Notes 56b (February 2018). Gramene Workshop at the 2018 Maize Genetics Meeting in Saint-Malo, France. Gramene webinar Feb 27, 2018: Plant Reactome pathway updates and new features. Gramene release # 56b: updates to Plant Reactome. The Gramene Database build 56 is out with 8 new plant genomes! Gramene will be at the PAG Conference 2018 See you in San Diego! Gramene: A comparative resource for plants. Align DNA and protein sequences.

mail.gramene.org mail.gramene.org

Index of /

Apache/2.2.15 (CentOS) Server at mail.gramene.org Port 80.

data.gramene.org data.gramene.org

Swagger UI

search.gramene.org search.gramene.org

Gramene Search

Try typing a gene identifier, ontology term, pathway, or functional domain. Suggested terms are provided as you type:. See the distribution of results across all genomes:. Concise view of available information about a gene:. You can use to ask sophisticated questions about the genes across all of our databases concerning crop and model plant genomes:. What are the homologs of Arabidopsis thaliana's PAD4 gene in the Oryzeae? Pick Species from List. Find and explore all data in Gramene database. Branching ...

maizev4.gramene.org maizev4.gramene.org

Gramene

Gramene Maize B73 RefGen v4 geome browser. Early Release of Zea mays B73 RefGen v4. Assembly and gene annotation. The early release of the data is to support individuals to check improvements in the gene of interest. The underlying assembly and final set of annotations may change until the data has been accepted by GenBank. We are working as rapidly as possible to finalize the assembly and the annotations. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. The asse...

oge.gramene.org oge.gramene.org

GrameneOGE

For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Oryza sativa Japonica (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Gramene OGE species. This release of version 2 includes the updated assembly and annotation of Oryza meridionalis. In addition blast search tool was installed and integrated with the genome browser, which use ensembl-79 infrastructure. This work is a joint project between OMAP. In addition...

tools.gramene.org tools.gramene.org

Gramene Web Tools

Search for something, why don't you?

archive.gramene.org archive.gramene.org

Gramene

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

INTERNAL PAGES

gramene.org gramene.org
1

Release Notes | Gramene

http://www.gramene.org/release-notes

Skip to main content. A comparative genomics plant resource. Gramene Database build 51 is out! Highlights of ICAR 2016 in Gyeongju, Korea. 2016 Basic DNA Biology and Bioinformatics STEM Camps. Gramene at ASPB's Plant Biology Conference 2016. Cereal Genomics Workshop at Cold Spring Harbor Laboratory - October 18-25, 2016. Release Notes 49 (January 2016). Release Notes 50 (April 2016). Release Notes 51 (August 2016). Release Notes 48b (November 2015). Release Notes 48 (November 2015).

2

Gramene's mailing list | Gramene

http://www.gramene.org/gramene-announce

Skip to main content. A comparative genomics plant resource. Gramene Database build 51 is out! Highlights of ICAR 2016 in Gyeongju, Korea. 2016 Basic DNA Biology and Bioinformatics STEM Camps. Gramene at ASPB's Plant Biology Conference 2016. Cereal Genomics Workshop at Cold Spring Harbor Laboratory - October 18-25, 2016. Gramene's mailing list. Subscribe to the Gramene's announcements mailing list. Gramene: A Resource for Comparative Plant Genomics. Funding is provided by the NSF.

3

Outreach | Gramene

http://www.gramene.org/outreach

Skip to main content. A comparative genomics plant resource. Gramene Database build 51 is out! Highlights of ICAR 2016 in Gyeongju, Korea. 2016 Basic DNA Biology and Bioinformatics STEM Camps. Gramene at ASPB's Plant Biology Conference 2016. Cereal Genomics Workshop at Cold Spring Harbor Laboratory - October 18-25, 2016. Videotutorials in Gramene's YouTube channel. Look here for past webinar slides. Sept 19 - 22, 2016, Hixton, UK. Sept 26-29, 2016; le Corum, Montpellier, France. 2nd Annual Plant Genomics...

4

Citing Gramene | Gramene

http://www.gramene.org/cite

Skip to main content. A comparative genomics plant resource. Gramene Database build 51 is out! Highlights of ICAR 2016 in Gyeongju, Korea. 2016 Basic DNA Biology and Bioinformatics STEM Camps. Gramene at ASPB's Plant Biology Conference 2016. Cereal Genomics Workshop at Cold Spring Harbor Laboratory - October 18-25, 2016. And identifying the version of Gramene being used (identified on the Home page) and the date accessed. For information on linking directly to particular data items, see this document.

5

About | Gramene

http://www.gramene.org/about-gramene

Skip to main content. A comparative genomics plant resource. Gramene Database build 51 is out! Highlights of ICAR 2016 in Gyeongju, Korea. 2016 Basic DNA Biology and Bioinformatics STEM Camps. Gramene at ASPB's Plant Biology Conference 2016. Cereal Genomics Workshop at Cold Spring Harbor Laboratory - October 18-25, 2016. Gramene's mailing list. Gramene: A Resource for Comparative Plant Genomics. Gramene's mailing list. Gramene is a collaborative effort among Cold Spring Harbor Laboratory.

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biokemia.lap.hu biokemia.lap.hu

Biokémia - Nukleinsav adatbázisok, kezelőfelületek, programok. A legjobb válaszok profiktól.

http://biokemia.lap.hu/nukleinsav_adatbazisok_kezelofeluletek_programok/11299378

Legyen a Startlap a kezdőlapom. Nukleinsav adatbázisok, kezelőfelületek, programok. Http:/ biokemia.lap.hu/. Ezt a linket add a Startlaphoz! DbEST (PCR amplifikált cDNS). Ezt a linket add a Startlaphoz! Eukariota promoter adatbázis (SIB). Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Genome Sorter, Genome Browser, Blat. Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! In silico PCR (UCSC). Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Minden ami kukuc :-).

pathway.gramene.org pathway.gramene.org

MaizeCyc Database Home, Metabolic Pathways in Maize or Corn

http://pathway.gramene.org/maizecyc.html

Metabolic Pathways in Maize: MaizeCyc Home. We are pleased to announce the release of the MaizeCyc database version 2.2. MaizeCyc is accesible from the following mirror site: MaizeGDB. MaizeCyc ver 2.2. Organism: Zea mays mays. Genome data: Zea mays mays strain/cv. B73. It may take 1-2 min to generate this view. Pathway Tools Omics Viewer. Upload the data sets. From gene expression, metabolomics and proteomics experiments to overlay and overview the profile in realtime. Developed by the SRI International.

environmentontology.net environmentontology.net

EnvO Adopters - Environment Ontology

http://www.environmentontology.net/users

Welcome to the Environment Ontology! The list below features current users of the Environment Ontology. Please let us know. If you're using EnvO and have not been mentioned or if you know of any other users! The Influenza Ontology is an application ontology covering the numerous aspects if influenza virus basic research, and surveillance. The influenza ontology extends the Infectious Disease Ontology (IDO). International Census of Marine Microbes (ICoMM). The International Census of Marine Microbes (ICoM...

environmentontology.com environmentontology.com

EnvO Adopters - Environment Ontology

http://www.environmentontology.com/users

Welcome to the Environment Ontology! The list below features current users of the Environment Ontology. Please let us know. If you're using EnvO and have not been mentioned or if you know of any other users! The Influenza Ontology is an application ontology covering the numerous aspects if influenza virus basic research, and surveillance. The influenza ontology extends the Infectious Disease Ontology (IDO). International Census of Marine Microbes (ICoMM). The International Census of Marine Microbes (ICoM...

rasmussenlab.weebly.com rasmussenlab.weebly.com

Plant Resources - The Rasmussen Lab

http://rasmussenlab.weebly.com/plant-resources.html

The Arabidopsis Information Resource (TAIR). Maize Cell Genomics page. The Bio-Analytic Resource for Plant Biology. Rasmussen Lab Intranet (password required). Proudly powered by Weebly.

pbtlabdu.net pbtlabdu.net

Useful Links

http://www.pbtlabdu.net/links.htm

Gramene (comparative grass genomics). Department of biochemistry and molecular biology, University of Dhaka. Bangladesh Rice Research Institute. International Rice Research Institute. The Arabidopsis Information Resource Center:. The Institute for Genome Research. Molecular and Functional Diversity of the Maize Genome. European nucleotide sequence database. Dept of Energy Joint Genome Institute. Munich Information Center for Protein Sequences. Genescan Web Server at MIT. Maize genetics and diversity.

tilling.ucdavis.edu tilling.ucdavis.edu

NSF Award Information - Tilling

http://tilling.ucdavis.edu/index.php/NSF_Award_Information

DBI-0822383. TRPGR:Efficient identification of induced mutations in crop species by ultra-high throughput DNA sequencing. Improve the efficiency of mutation discovery (UCD). Develop protocols that combine oligo capture of barcoded superpooled samples with Solexa sequencing for efficient mutation detection (FHCRC). Devise the optimal target number and pooling for mutation discovery, and the informatic pipeline for analysis (UCD). Define and optimize approaches for TILLING polyploid genomes (UCD).

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gramene.org gramene.org

Gramene: A comparative resource for plants

Try typing a gene identifier, ontology term, pathway, or functional domain. Suggested terms are provided as you type:. See the distribution of results across all genomes:. Concise view of available information about a gene:. You can use to ask sophisticated questions about the genes across all of our databases concerning crop and model plant genomes:. What are the homologs of Arabidopsis thaliana's PAD4 gene in the Oryzeae? Pick Species from List. Browse and analyze metabolic and regulatory pathways.

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Our Platform, Products and Services help your Organization and clients analyse data and consume insights. We build custom big data analytics and visualization solutions tailored to your needs. We bring expertise across data, design, business and a proven platform for large scale visual analysis. Cohesive Consumption for Decision making. Gramener provides a platform and services for visual analytics. Design Led Approach to Analytics. Gramener actively works with media on election analytics. Visualization ...

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