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DOE Joint Genome Institute: A DOE Office of Science User Facility of Lawrence Berkeley National Laboratory

DOE Joint Genome Institute. The fungus that made itself at home. Due to its aggressive capacity to damage the wood in homes, bioenergy researchers have been interested in harnessing the brown rot Serpula lacrymans towards breaking down plant mass for conversion to sustainable, alternative biofuels and bioproducts. In The ISME Journal, insights on how the fungus has responded to manmade changes in its ecological habitat, adapting to thrive in built environments. Succulent Genes for Water Use Efficiency.

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DOE Joint Genome Institute: A DOE Office of Science User Facility of Lawrence Berkeley National Laboratory | jgi.doe.gov Reviews
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DOE Joint Genome Institute. The fungus that made itself at home. Due to its aggressive capacity to damage the wood in homes, bioenergy researchers have been interested in harnessing the brown rot Serpula lacrymans towards breaking down plant mass for conversion to sustainable, alternative biofuels and bioproducts. In The ISME Journal, insights on how the fungus has responded to manmade changes in its ecological habitat, adapting to thrive in built environments. Succulent Genes for Water Use Efficiency.
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1 about us
2 phone book
3 our science
4 doe mission areas
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6 science programs
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DOE Joint Genome Institute: A DOE Office of Science User Facility of Lawrence Berkeley National Laboratory | jgi.doe.gov Reviews

https://jgi.doe.gov

DOE Joint Genome Institute. The fungus that made itself at home. Due to its aggressive capacity to damage the wood in homes, bioenergy researchers have been interested in harnessing the brown rot Serpula lacrymans towards breaking down plant mass for conversion to sustainable, alternative biofuels and bioproducts. In The ISME Journal, insights on how the fungus has responded to manmade changes in its ecological habitat, adapting to thrive in built environments. Succulent Genes for Water Use Efficiency.

SUBDOMAINS

img-dev.jgi.doe.gov img-dev.jgi.doe.gov

JGI IMG Integrated Microbial Genomes & Microbiomes

Integrated Microbial Genomes and Microbiomes. The mission of the Integrated Microbial Genomes and Microbiomes(IMG/M) system is to support the annotation, analysis and distribution of microbial genome and microbiome datasets sequenced at DOE's Joint Genome Institute (JGI). Biosynthetic gene clusters and novel secondary metabolites in IMG. Viral fragments derived from metagenomic samples. Find unique genes in genome. Find abundant protein families. MGM-26: February 26 - March 2, 2018.

img-proportal-dev.jgi.doe.gov img-proportal-dev.jgi.doe.gov

IMG ProPortal: IMG ProPortal: Home

IMG ProPortal Development Site. Prochlorococcus sp. MED4 imaged with TEM while dividing. Luke Thompson (Chisholm Lab, MIT) and Nicki Watson (Whitehead Institute), 2006. Isolate and Single Cell Genomes. The marine cyanobacterium Prochlorococcus. Which is abundant in the oceans, is a key model system in microbial ecology. IMG/ProPortal. And the closely related Synechococcus. Relies on IMG's data warehouse and comparative analysis tools ( Nucleic Acids Research, Volume 42 Issue D1. Tweets by IMG ProPortal.

genomeportal.jgi.doe.gov genomeportal.jgi.doe.gov

JGI Genome Portal - Home

Skip To Main Content. For additional search capabilities please use GOLD. Without restrictions (superusers only). Export Projects to Excel. Related genome resource and analysis tools are at http:/ jgi.doe.gov/fungi. Related genome resource and analysis tools are at img.jgi.doe.gov. Related genome resource and analysis tools are at http:/ phytozome.jgi.doe.gov. Non-public resource. Access can be restricted. For access information please email to Principal investigator. Group of Fungal Genomes. Visit JGI D...

img.jgi.doe.gov img.jgi.doe.gov

JGI IMG Integrated Microbial Genomes & Microbiomes

Beta Page - IMG Landing paging list of IMG companion systems. IMG/M Access and Users. IMG/M: Integrated Microbial Genomes and Microbiomes. Of the Integrated Microbial Genomes and Microbiomes(IMG/M). System is to support the annotation, analysis and distribution of microbial genome and microbiome datasets sequenced at DOE's Joint Genome Institute. IMG/M is also open to scientists worldwide. And follow the metadata requirements. For integrating data into IMG/M (see IMG/M submission site. Tools for identify...

genome.jgi.doe.gov genome.jgi.doe.gov

JGI Genome Portal - Home

Skip To Main Content. For additional search capabilities please use GOLD. Without restrictions (superusers only). Export Projects to Excel. Related genome resource and analysis tools are at http:/ jgi.doe.gov/fungi. Related genome resource and analysis tools are at img.jgi.doe.gov. Related genome resource and analysis tools are at http:/ phytozome.jgi.doe.gov. Non-public resource. Access can be restricted. For access information please email to Principal investigator. Group of Fungal Genomes. Visit JGI D...

gold.jgi.doe.gov gold.jgi.doe.gov

JGI GOLD | Home

Clustered Biosample Distribution Map. Metagenomic Biosample Distribution Map. Download Excel Data file. File last generated: 11 Jan, 2017. Welcome to the Genomes OnLine Database. GOLD Release v.6. Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. Register your project information and Metadata in the Genomes Online Database. Complete Projects 9,094.

proposals.jgi.doe.gov proposals.jgi.doe.gov

JGI Proposals

Submit a sequencing or synthesis proposal. The Work Initiation Process (WIP). Application provides a web-based interface that can be used to request sequencing or synthesis from the JGI ( view current product list. The current release supports submissions of all proposal types below. Please login to WIP to view specific instructions and templates for proposal submission. DOE JGI Emerging Technologies Opportunity Program (ETOP):. JGI-EMSL Collaborative Science Initiative:. This program is open to anyone&#...

mgm.jgi.doe.gov mgm.jgi.doe.gov

DOE JGI Microbial Genomics and Metagenomics Workshops

Feb 9 13, 2015. Sept 14 18, 2015. Microbial Genomics and Metagenomics Workshops. Walnut Creek, California. The US. Department of Energy Joint Genome Institute (DOE JGI) will be offering two five-day workshops on Microbial Genomics and Metagenomics during 2015. Each workshop will have a similar agenda and content, and will include seminars and extensive hands-on tutorials on how to use the IMG. Upcoming Workshops at the JGI. September 14 – 18, 2015 – Registration. Upcoming IMG Workshops outside JGI.

usermeeting.jgi.doe.gov usermeeting.jgi.doe.gov

11th Annual Genomics of Energy & Environment Meeting - DOE JGI User Meeting

DOE JGI User Meeting. Travel & Logistics. 11th Annual Genomics of Energy & Environment Meeting. March 21 – 24, 2016 in Walnut Creek, California. Marriott Hotel, 2355 North Main Street Walnut Creek, CA 94596. All current Community Science Program (CSP). Users as well as investigators considering an application for future CSP calls. Also, we welcome any and all researchers and students interested in energy and environmental genomics. Need some inspiration to participate? From a previous meeting.

INTERNAL PAGES

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1

Our Projects - DOE Joint Genome Institute

https://jgi.doe.gov/sequencing/why/3163.html

DOE Joint Genome Institute. Our DOE Mission Areas. DOE Bioenergy Research Centers. Adam Rivers, Metagenome Program. Learn more about the Metagenome Program. And look up protocols on how to submit samples for studying complex microbial communities. Read more about Dr. Rivers. Insights into How Soil Microbes Regulate Carbon and Sulfur Cycling. Focusing on microbial sulfate reducers gives researchers insights on how they regulate the carbon and sulfur cycles in peatlands, a major terrestrial carbon reservoir.

2

Our Projects - DOE Joint Genome Institute

https://jgi.doe.gov/sequencing/why/3128.html

DOE Joint Genome Institute. Our DOE Mission Areas. DOE Bioenergy Research Centers. Adam Rivers, Metagenome Program. Learn more about the Metagenome Program. And look up protocols on how to submit samples for studying complex microbial communities. Read more about Dr. Rivers. Insights into How Soil Microbes Regulate Carbon and Sulfur Cycling. Focusing on microbial sulfate reducers gives researchers insights on how they regulate the carbon and sulfur cycles in peatlands, a major terrestrial carbon reservoir.

3

About Us - DOE Joint Genome Institute

https://jgi.doe.gov/whoweare/rubin.html

DOE Joint Genome Institute. Our DOE Mission Areas. DOE Bioenergy Research Centers. Adam Rivers, Metagenome Program. Learn more about the Metagenome Program. And look up protocols on how to submit samples for studying complex microbial communities. Read more about Dr. Rivers. Insights into How Soil Microbes Regulate Carbon and Sulfur Cycling. Focusing on microbial sulfate reducers gives researchers insights on how they regulate the carbon and sulfur cycles in peatlands, a major terrestrial carbon reservoir.

4

Our Projects - DOE Joint Genome Institute

https://jgi.doe.gov/sequencing/why/CSP2007/aquilegia.html

DOE Joint Genome Institute. Our DOE Mission Areas. DOE Bioenergy Research Centers. Adam Rivers, Metagenome Program. Learn more about the Metagenome Program. And look up protocols on how to submit samples for studying complex microbial communities. Read more about Dr. Rivers. Insights into How Soil Microbes Regulate Carbon and Sulfur Cycling. Focusing on microbial sulfate reducers gives researchers insights on how they regulate the carbon and sulfur cycles in peatlands, a major terrestrial carbon reservoir.

5

Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction - DOE Joint Genome Institute

https://jgi.doe.gov/education/bioenergy

DOE Joint Genome Institute. Our DOE Mission Areas. DOE Bioenergy Research Centers. Adam Rivers, Metagenome Program. Learn more about the Metagenome Program. And look up protocols on how to submit samples for studying complex microbial communities. Read more about Dr. Rivers. Insights into How Soil Microbes Regulate Carbon and Sulfur Cycling. Focusing on microbial sulfate reducers gives researchers insights on how they regulate the carbon and sulfur cycles in peatlands, a major terrestrial carbon reservoir.

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JGI GOLD | Distribution Data

https://gold.jgi.doe.gov/distribution

Clustered Biosample Distribution Map. Metagenomic Biosample Distribution Map. Bacteroidetes Order II. Incertae sedis. Thermoanaerobacterales Family III. Incertae Sedis. Clostridiales Family XIII. Incertae Sedis. Clostridiales Family XVII. Incertae Sedis. Clostridiales Family XII. Incertae Sedis. Clostridiales Family XVI. Incertae Sedis. Bacillales Family X. Incertae Sedis. Thermoanaerobacterales Family IV. Incertae Sedis. GOLD Phylogenetic Tree View. Non-marine Saline and Alkaline. Low land river systems.

gold.jgi.doe.gov gold.jgi.doe.gov

JGI GOLD | Projects

https://gold.jgi.doe.gov/projects

Clustered Biosample Distribution Map. Metagenomic Biosample Distribution Map. Current Filters: None Set. Select Columns for Table. Select Fields using the Checkboxes. Legacy ER Project ID. Legacy ER Sample ID. Number of Analysis Projects. ITS Sample Group Name. Jeotgalibaca sp. PTS2502. Suillus ampliporus FC55 Standard Draft. Melampsora Americana R15-033-03 Standard Draft. Peziza echinispora DOB1120 Standard Draft. Suillus tomentosus FC115 Standard Draft. Chromobacterium violaceum ATCC 315322.

usermeeting.jgi.doe.gov usermeeting.jgi.doe.gov

Site Credits - DOE JGI User Meeting

http://usermeeting.jgi.doe.gov/credits

DOE JGI User Meeting. The following people are responsible for the. User Experience (UX) and Web Design, Project Lead. WordPress Development, Contractor. Graphic Design, LBL Creative Services Office. Accessibilty / Section 508 Statement. 1997-2016 The Regents of the University of California.

usermeeting.jgi.doe.gov usermeeting.jgi.doe.gov

Past Meetings - DOE JGI User Meeting

http://usermeeting.jgi.doe.gov/past-meetings

DOE JGI User Meeting. This is a list of all the past meetings. 2016 – UM11. 2015 – UMX. 2014 – UM9. 2013 – UM8. 2012 – UM7. 2011 – UM6. 2010 – UM5. 2009 – UM4. 2008 – UM3. 2007 – UM2. 2006 – UM1. Video highlights from 2016. Watch more videos of the 2016 DOE JGI User Meeting. Accessibilty / Section 508 Statement. 1997-2016 The Regents of the University of California.

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National User Facilities

http://www.lbl.gov/programs/national-user-facilities

Lawrence Berkeley National Laboratory. Today At Berkeley Lab. Berkeley Lab's User Facilities–Engines of Discovery. Berkeley Lab’s User Facilities provide state-of-the-art resources for scientists across the nation and around the world. About 10,000 researchers a year use these facilities, representing nearly one third of the total for all Department of Energy Office of Science User Facilities. Advanced Light Source (ALS). Scientific Networking Division Energy Sciences Network (ESnet). ESnet provides the ...

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Eterno bucle: mayo 2011

http://eterno-bucle.blogspot.com/2011_05_01_archive.html

Otro blog sobre bioinformática. . . Jueves, mayo 05, 2011. El genoma de Selaginella nos permite encontrar cambios en el contenido genético asociados con la evolución de las plantas vasculares. Acaba de salir publicado el artículo. Que describe el genoma de Selaginella moellendorfii. Tuve la oportunidad de participar en ese estudio y creo que es buena idea re-activar este espacio con un resumen corto. Selaginella es una planta terreste y que cuenta con un sistema vascular verdadero. El estudio de este org...

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Links - Joey Spatafora Lab

http://joeyspataforalab.weebly.com/links.html

July 24-30, 2015, Mycological Society of America, Edmonton, Alberta, Canada. August 3-7, 2015, 8th International Conference on Mycorrhizae, Flagstaff, Arizona. Mycological Society of America. North American Mycological Association. Society of Systematic Biologists. Assembling the Fungal Tree of Life. DOE Joint Genome Institute. U of British Columbia. CRG Barcelona, Spain. Create a free website. Create your own free website. Start your own free website.

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DOE Joint Genome Institute: A DOE Office of Science User Facility of Lawrence Berkeley National Laboratory

DOE Joint Genome Institute. The fungus that made itself at home. Due to its aggressive capacity to damage the wood in homes, bioenergy researchers have been interested in harnessing the brown rot Serpula lacrymans towards breaking down plant mass for conversion to sustainable, alternative biofuels and bioproducts. In The ISME Journal, insights on how the fungus has responded to manmade changes in its ecological habitat, adapting to thrive in built environments. Succulent Genes for Water Use Efficiency.

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