kanehisa.jp

kegg.jp

KEGG Mapping

http://www.kegg.jp/kegg/kegg1b.html

KEGG mapping as a set operation. Tools). Currently there are four types of mapping operations available in KEGG:. The fourth type may involve molecular or non-molecular datasets (orthologs, modules, and organisms) and the network dataset (taxonomic tree). Here is a summary of how the knowledge base of KEGG pathway maps and BRITE functional hierarchies is extended by the KEGG mapping set operations. 1 Organism-specific pathway/brite/module datasets. 3 Disease dataset with gene/genome information. On top o...

kegg.jp

KEGG Pathway Maps

http://www.kegg.jp/kegg/kegg3a.html

The KEGG pathway map is a moleculalr interaction/reaction network diagram represented in terms of the KEGG Orthology (KO) groups, so that experimental evidence in specific organisms can be generalized to other organisms through genomic information. Each map is manually drawn with in-house software called KegSketch, which generates the KGML file. This file is an SVG file containing graphics objects that are associated with KEGG objects (see KEGG object identifiers. Convention of map number prefix. Rn - Re...

kegg.jp

KEGG Overview

http://www.kegg.jp/kegg/kegg1a.html

1 Genomes to Biological System. The KEGG database has been in development by Kanehisa Laboratories. Since 1995, and is now a prominent reference knowledge base for integration and interpretation of large-scale molecular data sets generated by genome sequencing and other high-throughput experimental technologies. 2 The KEGG Database. KEGG modules of functional units. KEGG Orthology (KO) groups. KEGG organisms with complete genomes. Gene catalogs of complete genomes. Sequence similarity database for GENES.

kegg.jp

KEGG Objects

http://www.kegg.jp/kegg/kegg3.html

Are biological entities from molecular to higher levels that are represented as database entries in KEGG, such as genes and protein, small molecules, reactions, pathways, diseases and drugs. The identifier of each database entry is generally in the form of. Where "db" is the database name and "entry" is the entry name or the accession number (see DBGET. Is thus equivalent to dr:D01441. Map, ko, ec, rn, (org). Br, jp, ko, (org). M, (org) M. Crude drug, etc. Where "org" is the KEGG organism code and "gene"...

kegg.jp

KEGG Color Codes

http://www.kegg.jp/kegg/kegg1c.html

Used in global pathway maps and genome maps). Metabolism of other amino acids. Glycan biosynthesis and metabolism. Metabolism of cofactors and vitamins. Metabolism of terpenoids and polyketides. Biosynthesis of other secondary metabolites. Xenobiotics biodegradation and metabolism. Reference pathway (KO, EC, Reaction). Disease gene and drug target. Pathway mapping of two organisms (global/overview maps). Organisms 1 and 2. Pathway mapping of multiple organisms (regular maps). Last updated: August 5, 2016.

kegg.jp

Searching KEGG

http://www.kegg.jp/kegg/kegg1d.html

The KEGG database is made accessible in two formats. One is the flat-file format for use in simple searches by the DBGET database retrieval system. The other is the relational database format for more sophisticated queries in selected databases. Has been developed as the backbone retrieval system for the GenomeNet and KEGG services (see the history of development. DBGET has two basic commands:. Bget - to retrieve 'db:entry'. Bfind - to find 'db:entry's by keyword search. ENTRY, NAME, and entire text.

kegg.jp

KEGG - KegTools

http://www.kegg.jp/kegg/download/kegtools.html

Are desktop applications that run on the Mac OS X, Windows, and Linux platforms with Java 1.6 or newer. The following three applications are freely available, but they are no longer supported. Java application for browsing BRITE hierarchy files. KegHier 1.1.1 (December 22, 2011) [ zip. Java application for microarray data analysis. KegArray 1.2.4 (October 16, 2009) [ zip. Java application for drawing compound and glycan structures. KegDraw 0.1.14beta (December 22, 2011) [ zip.

pathway.jp

Pathway Solutions Inc.  :: Company ::

http://www.pathway.jp/about.html

Pathway Solutions Inc., Company. Go back to Top page. Get a commercial license. See the list of Authorized Business Providers. Technical support (by the KEGG team). Pathway Solutions is the exclusive worldwide licensing agent for KEGG. We provide licenses to end users, product developers and service providers. Supported by impressive SGI and Sun supercomputers, KEGG data is curated by a team of full-time staff and distributed to thousands of organizations worldwide. Brief history of Pathway Solutions.

bioinformatics.jp

NPO Bioinformatics Japan

http://www.bioinformatics.jp/en

NPO Bioinformatics Japan is a nonprofit organization under the Law to Promote Specified Nonprofit Activities in Japan. It was established in December 2009 with certification from the Cabinet Office, Government of Japan. The aim of this NPO is to disseminate knowledge bases and associated bioinformatics technologies for deciphering the genome and to promote genome-based medical and industrial innovations. To cope with this problem, Kanehisa Laboratories. Kyoto Encyclopedia of Genes and Genomes.