mgltools.scripps.edu

imranpkm.blogspot.com

Atoms and Space: September 2014

http://imranpkm.blogspot.com/2014_09_01_archive.html

Tuesday, September 2, 2014. Brilliant Blunders - Mario Livio - Review. Mistakes are portals of Discovery! Mario Livio explores some of the most brilliant blunders in the history of science, but with a pinch of excessive elaboration, at least for those who are already aware of Darwin's ignorance of Mend. El and Einstein's utterance about cosmological Constant. His prediction was drastic. The first part of the book, on Darwin's blunder is a bit too involved with genetics and forces a dry discussion. Yo...

imranpkm.blogspot.com

Atoms and Space: Valences of the Elements

http://imranpkm.blogspot.com/2014/12/valences-of-elements.html

Monday, December 29, 2014. Valences of the Elements. Chemistry of the Periodic Table. Many people believe that the valences of the elements are those which can be derived by looking at the Groups (columns) of the Periodic Table. Lange's Handbook of Chemistry, 8th Ed. Norbert A. Lange (Ed.), Handbook Publishers, Inc. 1952. Mohamed Imran P K. Subscribe to: Post Comments (Atom). Mohamed Imran P K. Vaniyambadi, Tamil Nadu, India. View my complete profile. J Elect Mat, 2015 July. Int J Pharma, 2014 Apr. E-jou...

mgl.scripps.edu

Projects (as of March in 2016) — Molecular Graphics Lab

http://mgl.scripps.edu/projects

Meso-scale Modeling and Visualization. GO Fight Against Malaria 2012-02-06. Embedded Python Molecular Viewer (ePMV) 2012-02-02. 3D Printed Models and Augmented Reality for Chemists 2011-09-20. World Community Grid Lecture Series - FightAIDS@Home 2010-12-08. Projects (as of March in 2016). Computational methods for docking active site ligands (inhibitors), and for elaboration and refined design of inhibitor lead compounds;. Molecular biology/virology of the FIV system. Rapid automated docking of flexible ...

mgl.scripps.edu

Downloads — Molecular Graphics Lab

http://mgl.scripps.edu/downloads

The AutoDock home page - software for automated docking and scoring of flexible ligands to receptors; can also be used for protein-protein docking. New program for fast receptor-ligand docking and affinity prediction. Python Based Software Development at MGL. Which includes the download for Python packages, MSMS binaries, and a pre-compiled Python Interpreter for Unix. Embedded Python Molecular Viewer. The Molecular Graphics Laboratory. Powered by Plone, the Open Source Content Management System.

grahamjlab.org

SciViz Software tools - Mesoscope @ UCSF

http://www.grahamjlab.org/sciviz-careers-tools/sciviz-software-tools

SciViz Careers and Tools. VIZBI 2013 uPy/ePMV/autoPACK Workshop. Johns Hopkins Workshop 2013. AMI ePMV workshop 2013. Behold HIV-1 0.1.6. Best Blender Animation Ever (uses ePMV too! HHMI illustration brought back to life. Immune Defense kickstarter 16 days. Johnson wins 2nd place Biophysical Society Annual Meeting 2014 Image Contest. Lecture at Faraday Discussion 169 in May, 2014. Lecture: Sampson Feldman Visiting Scholar. Ritisha Laungani receives Allan Kuchinsky Student Award. SciViz Careers and Tools.

keck2.ucsd.edu

wiki:software [Keck II wiki]

https://keck2.ucsd.edu/dokuwiki/doku.php/wiki:software

How to use it. Running non-interactive long jobs. The following scientific packages are installed on KeckII workstations:. Sander, pmemd, pmemd.cuda. The Intel compilers version 12.1.5 are installed in. Directory. Use the following command to initialize your environment before using the compilers:. Additionally, a recent version of OpenMPI (v. 1.6.2) is installed in. How to use it. You should see something similar to this:. You need to execute these two steps:. Module load pymol pymol. On this help page.

biskit.pasteur.fr

Biskit: python for structural bioinformatics

http://biskit.pasteur.fr/sitemap

Only in current section. An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. PVM installation from source. Biggles 1.6.5 numpy. Biggles 1.6.4 repackaged. Numeric / Lapack Atlas. Pypvm 0.95x repackaged. PVM 34.5 7. Zsh and emacs settings. Python-biggles 1.6.5-1. Mac OS X installation. Structure sampling with Xplor. Structure sampling with Amber. Overview of all scripts. Biskit - A software platform for structural bioinformatics.

imranpkm.blogspot.com

Atoms and Space: June 2014

http://imranpkm.blogspot.com/2014_06_01_archive.html

Friday, June 6, 2014. Hyperspace: A Scientific Odyssey Through Parallel Universes, Time Warps, and the 10th Dimension - Michiu Kaku - Review. Written in a simple manner Kaku takes us on a journey from finite to infinite with reasons. The entry into dimensions 1,2,3,4. The matrix to describe super symmetry using Einstein, Maxwell and Yang-Mill is excellent (Gravity and light, Nuclear Force and Matter), the result of which could be leptons and muons. (just like bosons and fermions). He pays rich tribute to...

imranpkm.blogspot.com

Atoms and Space: Survival of the sickest‬ - Sharon Moalem - Review

http://imranpkm.blogspot.com/2015/05/review-survivalofthesickest-by-sharon.html

Tuesday, May 5, 2015. Survival of the sickest‬ - Sharon Moalem - Review. Running into 8 chapters, the first 3 were very attractive. This should make a good reading both for the beginners and non-science readers. Written in a very simple language the book lacks references or foot notes then and there. A few notes are given at the end of the book, but if that was provided in-situ, the readability would have been enhanced. Ch1 Ironing it out. The long held tradition of bloodletting to fight disease may ther...

biskit.pasteur.fr

Related Links — Biskit: python for structural bioinformatics

http://biskit.pasteur.fr/links

Only in current section. The Python Programming Language. MMTK - the Molecular Modelling Tool Kit. MGLTools - Structure Visualization and Analysis. ISD - Inferential Structure Determination. Review of Python IDEs. Cookies are not enabled. You must enable cookies before you can log in. Links to related information and projects. The Python Programming Language. The language in which and for which Biskit is written. MMTK - the Molecular Modelling Tool Kit. MGLTools - Structure Visualization and Analysis.