myhits.isb-sib.ch
MyHitsMyHits: an interactive resource for protein annotation and domain identification
http://myhits.isb-sib.ch/
MyHits: an interactive resource for protein annotation and domain identification
http://myhits.isb-sib.ch/
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MyHits | myhits.isb-sib.ch Reviews
https://myhits.isb-sib.ch
MyHits: an interactive resource for protein annotation and domain identification
myhits.isb-sib.ch
JACOP
https://myhits.isb-sib.ch/cgi-bin/jacop
JACOP documentation will allow you to interpret results more easily. It is available here. Minimal number of sequences is 3. Maximum number of sequences is 700. Maximum total length of sequences is 350000. Height to cut the tree when the number of sequences in an independent group 200. The clustering of smaller groups is not affected by this parameter. This service may require several minutes, so please be patient. Sperisen Peter and Pagni Marco. 2005 Aug; 6.
MAFFT
https://myhits.isb-sib.ch/cgi-bin/mafft
Maximum number of sequences is 1000. Maximum total length of sequences is 150000. Extending gap penalty/Offset value. Automatic detection of the strategy. FFT-NS-1: Very rough and very fast ( 2000 sequences); progressive method. FFT-NS-2: Rough and fast; progressive method. FFT-NS-i-2: Medium; iterative refinement method, two cycles only. FFT-NS-i: Accurate and slow; iterative refinement method. G-INS-i: Suitable for global alignment. L-INS-i: Most accurate in many cases, for a single domain. 2005 Jan; 33.
HitKeeper main index page
https://myhits.isb-sib.ch/hk
WWW Services on this site. Essential queries and operations (HTML query forms):. Connect (if you have an account, useless otherwise). Query the classifications (e.g. Taxonomy). Query the list of hit (sequence vs. Query the list of hat (sequence vs. Query the list of hot (motif vs. Query the list of hit using metamotif. Ie motif of motif. Exhaustive list of all queries and operations. Other services on this site. REST Service: URL syntax and help. SOAP service: WSDL file. Save as', and make it executable).
Protein Hub
https://myhits.isb-sib.ch/cgi-bin/protein_hub
Enter one or several protein identifiers. To T-Coffee (align, slow). To M-Coffee (align, slow). To Expresso (align with struct., slower). To MAFFT (align, fast). To Profile Align (slow). To Catalogue Factory (pretty output). To JACOP (classification, slow). To MkDom2 (classification, fast). To ProtoGene (CDS retrieval). To Query By Protein. To Reformat SEQ (your sequences). Inspect the following information. Pre-select proteins by comparing their mutual identities. HTML walker [5 prot./page].
MyHits
https://myhits.isb-sib.ch/cgi-bin/index
Is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models. To version 7.187. To BLAST version 2.2.28. To version 7.058b. To version 3.1b1. Link to new TCoffee server. Add the CS-BLAST tool.
TOTAL PAGES IN THIS WEBSITE
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ExPASy: SIB Bioinformatics Resource Portal - Categories
http://www.expasy.org/proteomics/families__patterns_and_profiles
Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. No support from the ExPASy Team). Bull; protein domains and families • [more]. Bull; PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. [less]. Bull; UniProtKB family classification and annotation • [more]. Bull; protein domains database and tools • [more]. Bull; The l...
ExPASy: SIB Bioinformatics Resource Portal - Categories
http://www.expasy.org/proteomics
Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. No support from the ExPASy Team). Bull; functional information on proteins • [more]. Bull; protein sequence database • [more]. Bull; protein-protein interactions • [more]. Bull; STRING is a database of known and predicted protein-protein interactions. The database contains information from numerous sources, including experimental repositories, computational prediction metho...
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Myhits
15 července 2010 v 15:30 Thomas. 1 Část párty je tu. 15 července 2010 v 15:15 Thomas. Jako první je tu NECHTE SI OHODNOTIT BLOG. Za chvíli máte blog ohodnocený. 15 července 2010 v 15:01 Thomas Různé. AhoJiQ, uSpoŘádÁm tU nA bLoGu pHárTy. 15:15 - 15:30 - Nechte si ohodnotit blog. 15:30 - 15:45 - Přihlášky do SONB. 15:46 - 16:00 - Rychlobleskovky. PřiĎtE, BuDu sE TěšiT. 15 července 2010 v 12:37 Thomas Různé. Šaty - Jsou pěkné, ale na můj vkus moc zářivé, dělají ji tlustější než doopravdy je. 40 %. Živí se ...
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Myhits
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MyHits
Is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models. Update of protein databases. To version 7.187. To BLAST version 2.2.28. To version 7.058b. To version 3.1b1. Link to new TCoffee server. Add the CS-BLAST tool.
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MyHits
MyHits
Is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models. To version 7.187. To BLAST version 2.2.28. To version 7.058b. To version 3.1b1. Link to new TCoffee server. Add the CS-BLAST tool.
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