optirna.unl.edu

OptiRNA at the University of Nebraska

This web service does NOT run BLAST searches. To find possible matches in untargeted genes. Please check the uniquenessof your siRNA candidates by BLAST against the transcriptome of the organism! This algorithm has been trained and validated on mammalian sequences and on the following cell lines: HeLa,NCI-H1299, and HEK293 using Lipofectamine and/or Oligofectamine transfection maintained at a level of 95 percent transfection. Knockdown was measured 24 hours after transfection. Sladunga AT unl DOT edu.

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OptiRNA at the University of Nebraska | optirna.unl.edu Reviews

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This web service does NOT run BLAST searches. To find possible matches in untargeted genes. Please check the uniquenessof your siRNA candidates by BLAST against the transcriptome of the organism! This algorithm has been trained and validated on mammalian sequences and on the following cell lines: HeLa,NCI-H1299, and HEK293 using Lipofectamine and/or Oligofectamine transfection maintained at a level of 95 percent transfection. Knockdown was measured 24 hours after transfection. Sladunga AT unl DOT edu.

<META> KEYWORDS

1 please cite

2 istvan ladunga

3 nucleic acids res

4 algorithm and software

5 istvan steve ladunga

6 university of nebraska lincoln

7 web design

8 systems administration

9 dr fangrui ma

10 coupons

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OptiRNA at the University of Nebraska | optirna.unl.edu Reviews

https://optirna.unl.edu

This web service does NOT run BLAST searches. To find possible matches in untargeted genes. Please check the uniquenessof your siRNA candidates by BLAST against the transcriptome of the organism! This algorithm has been trained and validated on mammalian sequences and on the following cell lines: HeLa,NCI-H1299, and HEK293 using Lipofectamine and/or Oligofectamine transfection maintained at a level of 95 percent transfection. Knockdown was measured 24 hours after transfection. Sladunga AT unl DOT edu.

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compbio.unl.edu

Members - Computational Biology Research Lab

http://compbio.unl.edu/members.html

Istvan (Steve) Ladunga, Ph.D. Professor of Computational Biology, 346C Hardin Hall North Wing. At the University of Nebraska-Lincoln. PhD, Molecular Biology. Professor of Computational Biology. 346C Hardin Hall North Wing, Lincoln, NE 68583-0963. Drs Jean-Jack Marco Riethoven. Now Director of the Bioinformatics Core Research Facility. At the University of Nebraska-Lincoln. Samuel A. McInturf. Now at the University of Missouri, Columbia. MS, Computer Science and Engineering. Now at Qualcomm at San Diego.

compbio.unl.edu

Computational Biology Research Lab, Projects

http://compbio.unl.edu/projects.html

Reconstruction of Transcriptional Regulatory Networks in Saccharomyces cerevisiae. And in Chlamydomonas reinhardtii. Carbon-concentrating mechanisms in Chlamydomonas reinhardtii. Computational Mapping of Nucleosomes to Genomes. Optimal RNA Interference Design. Transcriptional Regulation of Lipid Metabolism (starting). Page under construction - We are currently in the process of designing our web site. Designed by Peter Laczko.

compbio.unl.edu

Computational Biology Research Lab, Projects

http://compbio.unl.edu/patents.html

Istvan (Steve) Ladunga, PhD. Ladunga, I., Smith, R.F and Wiese B.A.: FASTA-SWAP and FASTA-PAT: pattern database searches using combinations. Methods and systems for identification of protein classes. Patent Number: US5987390, 1999, Industry, United States of America. A browsable database for biological use. Patent Number: WO2004053769 (A3) , 2004, Industry, United States of America. A browsable database for biological use. Patent Number: US2005149269, 2005, Industry, United States of America. Patent Numb...

compbio.unl.edu

Computational Biology Research Lab, Home Page

http://compbio.unl.edu/index.html

Istvan (Steve) Ladunga, Ph.D. Professor of Computational Biology, E145 Beadle Center. At the University of Nebraska-Lincoln. Our Laboratory conducts research in the computational aspects of:. Reconstructing transcriptional regulatory networks in algae and S. cerevisiae. Carbon dioxide concentration mechanisms in algae. Transcriptional Competency of Nucleosomes. In these works, we utilize existing methods and develop new ones in:. Transcription factor binding site predictions,. Machine learning, and.

compbio.unl.edu

Computational Biology Research Lab, Publications

http://compbio.unl.edu/publications.html

Ladunga, I. (2010) (Editor) Computational Biology of Transcription Factor Binding. Methods in Molecular Biology. Springer, Berlin.ISBN: 978-1-60761-853-9. Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I. (2010) Weakly positioned nucleosomes enhance the transcriptional competency of chromatin. PloS One 5(9):e12984. Full text. Ladunga, I. (2010) An overview of the computational analyses and discovery of transcription factor binding sites. Van Dijk K, Ding Y, Malkaram S, Riethoven JJ, Li...

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optirna.unl.edu

OptiRNA at the University of Nebraska

This web service does NOT run BLAST searches. To find possible matches in untargeted genes. Please check the uniquenessof your siRNA candidates by BLAST against the transcriptome of the organism! This algorithm has been trained and validated on mammalian sequences and on the following cell lines: HeLa,NCI-H1299, and HEK293 using Lipofectamine and/or Oligofectamine transfection maintained at a level of 95 percent transfection. Knockdown was measured 24 hours after transfection. Sladunga AT unl DOT edu.

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