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PDBML Schema Resources

The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary. Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. Data files in PDBML format can be downloaded from the wwPDB ftp site.

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PDBML Schema Resources | pdbml.pdb.org Reviews
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The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary. Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. Data files in PDBML format can be downloaded from the wwPDB ftp site.
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PDBML Schema Resources | pdbml.pdb.org Reviews

https://pdbml.pdb.org

The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary. Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. Data files in PDBML format can be downloaded from the wwPDB ftp site.

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Browse/Download PDBML Schema

http://pdbml.pdb.org/schema/pdbml-downloads.html

PDBML schema for the PDB Exchange Dictionary (PDBx/mmCIF) V4.2 with transitional extensions to support new features of the PDB deposition and annotation system. The current version of PDB Exchange Data dictionary developed by the wwPDB partners for data exchange. PDBML Schema ». Dictionary Browser ». Dictionary Text ». Dictionary Text (gz) ». PDBML schema for the PDB Exchange Dictionary (PDBx/mmCIF) V4.0 supporting the data files in the current PDB archive. PDBML Schema ». Dictionary Browser ». PDBML Sch...

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PDBML Schema Resources

http://pdbml.pdb.org/pdbml-home-page.html

The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary. Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. Data files in PDBML format can be downloaded from the wwPDB ftp site.

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ndb-mirror-2.rutgers.edu ndb-mirror-2.rutgers.edu

Nucleic Acid Standards - Standard Ref. Frame

http://ndb-mirror-2.rutgers.edu/ndbmodule/standards/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A Standard Reference Frame for the Description. Of Nucleic Acid Base-pair Geometry. Journal of Molecular Biology. For full text please refer the PDF Version. 1995-2015 The Nucleic Acid Database Project Rutgers, The State University of New Jersey.

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ADIT

http://sw-tools.pdb.org/apps/ADIT

An Information Portal to Biological Macromolecular Structures. ADIT - Workstation Version. ADIT is an integrated software system for editing and checking PDB structure data entries. The functionality of the workstation version is similar to that provided by the web-based PDB deposition system. The system includes tools to help users prepare and check structure depositions. The ADIT is currently available in source form and in binary form for Linux platforms. Installation notes for source version of ADIT.

ndb-mirror-3.rutgers.edu ndb-mirror-3.rutgers.edu

Nucleic Acid Standards - Standard Ref. Frame

http://ndb-mirror-3.rutgers.edu/ndbmodule/standards/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A Standard Reference Frame for the Description. Of Nucleic Acid Base-pair Geometry. Journal of Molecular Biology. For full text please refer the PDF Version. 1995-2015 The Nucleic Acid Database Project Rutgers, The State University of New Jersey.

ndbserver.rutgers.edu ndbserver.rutgers.edu

Nucleic Acid Standards - Standard Ref. Frame

http://ndbserver.rutgers.edu/ndbmodule/standards/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A Standard Reference Frame for the Description. Of Nucleic Acid Base-pair Geometry. Journal of Molecular Biology. For full text please refer the PDF Version. 1995-2015 The Nucleic Acid Database Project Rutgers, The State University of New Jersey.

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PDBML Schema Resources

The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary. Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. Data files in PDBML format can be downloaded from the wwPDB ftp site.

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PDBML Schema Resources

The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the PDBx/mmCIF Exchange Data Dictionary. Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. Data files in PDBML format can be downloaded from the wwPDB ftp site.

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