elm.eu.org
ELM - Links
http://elm.eu.org/infos/links.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. The ELM Conservation Scorer assigns a score to each ELM which corresponds to this ELM's conservation throughout homologous sequences. Exploring Interactions of Linear Motifs. The Phospho.ELM database contains a collection of experimentally verified Serine, Threonine and Tyrosine sites in metazoan proteins. The compendium of conditional regulatory interaction interfaces. Other general motif resources. GPI Modification Site Prediction.
snpeffect.switchlab.org
About | SNPeffect 4.0
http://snpeffect.switchlab.org/about
Welcome to SNPeffect 4.0. Changelog, bugfixes and known bugs. SNPeffect pipeline for phenotyping coding protein variants. Functional sites and structural features. Cellular processing and posttranslational modification. Structural analysis of variants. 1 Welcome to SNPeffect 4.0. SNPeffect is a database. For phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome.
comparasite.hgc.jp
About Comparasite | Comparasite full-length cdna database
http://comparasite.hgc.jp/docs/definitions.htm
For genome-genome alignment, an alignment program, LALIGN was used. We selected this program because it is relatively robust to gaps. Its homepage is at http:/ www.ch.embnet.org/software/LALIGN form.html. For mapping of cDNAs to genomes, a program to map the cDNA sequence onto the genome. GO terms is assigned using InterProScan. GO homepage is at http:/ www.geneontology.org/. Identification of CpG-like element. Identification of putative orthologous (counterpart) genes. Genome, because it is most complete.
fais.hgc.jp
FAiS (Functional Analysis in silico)
http://fais.hgc.jp/index.html.en
PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).
fais.hgc.jp
FAiS (Functional Analysis in silico)
http://fais.hgc.jp/index.html
PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).
fais.hgc.jp
FAiS (Functional Analysis in silico)
http://fais.hgc.jp/member/alumni_ja.html
PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).
fais.hgc.jp
FAiS (Functional Analysis in silico)
http://fais.hgc.jp/index_en.html
PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).
hgc.jp
ヒトゲノム解析センター
http://hgc.jp/japanese
PSORT, PSORT II, iPSORT. Open source clustering software. Shirokane3 が TOP500 で 193 位になりました. Genomon2 Tutorial 実践編 6 月 24 日開催. Shirokane3 Tutorial/Consulting 6 月 24 日開催. Shirokane3 Mini Tutorial/Consulting 6 月 1 日開催. 空調消費電力量の 2009 年度比約 10 % 削減を達成しました (2010 年 7 月).
