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Structure Function Linkage Database
The SFLD is a database links evolutionarily related sequences and structures from mechanistically diverse superfamilies of enzymes to their chemical reactions.
http://sfld.rbvi.ucsf.edu/django/
UCSF DOCK
The Official UCSF DOCK Web-site Kuntz Group. Shoichet Group
http://dock.compbio.ucsf.edu/
Representing structure-function relationships in mechanistically ...
We discuss here our approaches to solving these problems in the development of a Structure-Function Linkage Database (SFLD) (online at http://sfld.rbvi.ucsf.edu).
http://www.ncbi.nlm.nih.gov/pubmed/15759641
Representing Structure-Function Relationships in Mechanistically ...
http://sfld.rbvi.ucsf.edu). 1. Introduction The solution of a protein’s three-dimensional structure often does not immediately lead to the determination of its ...
http://helix-web.stanford.edu/psb05/pegg.pdf
Allan Kuchinsky, Scientist, Agilent Technologies Inc. | ZoomInfo.com
Allan Kuchinsky: Maybe take a look at http://sfld.rbvi.ucsf.edu/django/ and http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html and http://bioportal.bioontology.org/ (the guys ...
http://www.zoominfo.com/people/Kuchinsky_Allan_1088371034.aspx
Structure-Function Linkage Database - RBVI Home Page
The SFLD is available to the public at http://sfld.rbvi.ucsf.edu. References: Pegg SCH, Brown S, Ojha S, Huang CC, Ferrin TE, Babbitt PC, "Representing structure ...
http://www.cgl.ucsf.edu/Research/sfld/
Single sign-on "How To" Guide - RBVI Home Page
Add the list of sites you want to enable for single sign on. For example: https://www.sacs.ucsf.edu; https://www.cgl.ucsf.edu; https://sfld.rbvi.ucsf.edu
http://www.cgl.ucsf.edu/Security/CGLAUTH/CGLAUTH.html
Online Sources of Sequence Alignments
http://sfld.rbvi.ucsf.edu/ deep and detailed coverage but of relatively few enzyme superfamilies lists some but not all structures can set up browser (except Safari ...
http://www.cgl.ucsf.edu/home/meng/sources.html
HCS: Hierarchical Classification of Hydrolases Catalytic Sites
http://sfld.rbvi.ucsf.edu/ EzCatDB - A Database of Enzyme Catalytic Mechanisms http://mbs.cbrc.jp/EzCatDB/ MACiE - A database of enzyme reaction mechanisms
http://www.enzyme.chem.msu.ru/hcs/
Annotation Error in Public Databases: Misannotation of Molecular ...
Further work is underway to provide these results online as part of a “misannotation resource” at the SFLD web site (http://sfld.rbvi.ucsf.edu).
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2781113/
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