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Sfold - Software for Statistical Folding and Studies of Regulatory ...
Sfold predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids.
http://sfold.wadsworth.org/cgi-bin/index.pl
Online Tools/SiRNA Design - Protocol Online - Your lab's reference ...
... aims to provide tools for improved siRNA design by combining secondary structure and accessibility prediction with empirical design rules. Free. http://sfold.wadsworth.org ...
http://www.protocol-online.org/prot/Research_Tools/Online_Tools/SiRNA_Design/index.html
Welcome to STarMir - Wadsworth Center, NYS Department of Health
Current size limit for the entire mRNA (Estimated CPU time for some typical lengths) 10000 bases: Email address (required) Model to use
http://sfold.wadsworth.org/cgi-bin/starmir.pl
SiRNA Design/Short Hairpin RNA (shRNA) Design Tools
Short Hairpin RNA (shRNA) Design Tools ... Protocols. shRNA Design Tool (Ambion) This tool will generate hairpin siRNA-encoding DNA oligonucleotide insert sequences ...
http://www.protocol-online.org/prot/Research_Tools/Online_Tools/SiRNA_Design/Short_Hairpin_RNA__shRNA__Design_Tools/index.html
OptiRNA at the University of Nebraska
You can obtain sfold output files by submitting your sequence to http://sfold.wadsworth.org/index.pl.
http://optirna.unl.edu/
NAi Shifra Ben- D
SFold http://sfold.wadsworth.org/sirna.pl Whitehead siRNA Selection Web Server http://jura.wi.mit.edu/siRNAext/ siDirect http://design.rnai.jp/sidirect/index.php (Ui ...
http://bip.weizmann.ac.il/education/ws/04-05/060105_dh/rnai-design.pdf
RNA secondary structure prediction by centroids in a Boltzmann ...
Centroids are available on the Sfold server at http://sfold.wadsworth.org. PMCID: PMC1370799 PMID: 16043502 [PubMed - indexed for MEDLINE] Publication Types:
http://www.ncbi.nlm.nih.gov/pubmed/16043502
Sfold web server for statistical folding and rational design of ...
The Sfold server is available at http://sfold.wadsworth.org and http://www.bioinfo.rpi.edu/applications/sfold. PMCID: PMC441587 PMID: 15215366
http://www.ncbi.nlm.nih.gov/pubmed/15215366
Adam Wolenc | LinkedIn
I am creating a database for sfold (http://sfold.wadsworth.org/) I am developing a pipeline for analyzing the output of the Illumina Genome Analyzer when applied to small ...
http://www.linkedin.com/in/adamuu
Design and Cloning of an shRNA into a Lentiviral Silencing Vector ...
A number of algorithms have been developed to predict effective siRNA sequences (e.g., http://www.ambion.com/ or http://sfold.wadsworth.org/). A database search is ...
http://cshprotocols.cshlp.org/content/2008/8/pdb.prot5009.full
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