smid-db.org smid-db.org

smid-db.org

SMID-DB.org

Welcome to the Small Molecule Identifier Database (SMID DB). Entifiers) represent gene-style identifiers for small molecules newly identified in C. elegans. And other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. Why do we need SMIDs? How to cite SMID DB. SMID-DB.org is operating in beta-mode. Please report any errors to smid-db@cornell.edu.

http://www.smid-db.org/

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SMID-DB.org | smid-db.org Reviews
<META>
DESCRIPTION
Welcome to the Small Molecule Identifier Database (SMID DB). Entifiers) represent gene-style identifiers for small molecules newly identified in C. elegans. And other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. Why do we need SMIDs? How to cite SMID DB. SMID-DB.org is operating in beta-mode. Please report any errors to smid-db@cornell.edu.
<META>
KEYWORDS
1 smid db
2 browse
3 download
4 smids
5 mall m
6 olecule id
7 browse smids
8 search smids
9 example ascr#3
10 metabolomics resources
CONTENT
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smid db,browse,download,smids,mall m,olecule id,browse smids,search smids,example ascr#3,metabolomics resources
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SMID-DB.org | smid-db.org Reviews

https://smid-db.org

Welcome to the Small Molecule Identifier Database (SMID DB). Entifiers) represent gene-style identifiers for small molecules newly identified in C. elegans. And other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. Why do we need SMIDs? How to cite SMID DB. SMID-DB.org is operating in beta-mode. Please report any errors to smid-db@cornell.edu.

INTERNAL PAGES

smid-db.org smid-db.org
1

SMID-DB

http://www.smid-db.org/howtocite

How to cite SMID DB. If you use materials from SMID DB for your research, please cite us accordingly:. Small Molecule Identifier Database (SMID DB). Http:/ smid-db.org. 27 Oct. 2011. Boyce Thompson Institute, Cornell University. date accessed.

2

SMID-DB

http://www.smid-db.org/links

Biological Magnetic Resonance Databank. METLIN: Metabolite and Tandem MS Database.

3

SMID-DB

http://www.smid-db.org/browse

SMID list last revised 05-12-2016. N-(6'R-[3' R,5' R-dihydroxy-6' S-methyl-(2H)-tetrahydropyran-2'-yloxy]-2'E-heptenoyl)-4-aminobenzoic acid. 5a,25S)-3-ketocholest-1,7-dien-26-oic acid. R)-6-( (2R,3R,5R,6S)-5-( (R)-6-( (2R,3R,5R,6S)-3,5-dihydroxy-6-methyltetrahydro-2H- pyran-2-yl)oxy)heptanoyl)oxy)-3-hydroxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)heptanoic acid. 3R,8R,10R)-10-( (2R,3R,5R,6S)-3,5-dihydroxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)-3,8-dihydroxyundecanoic acid. R)-4-( (2R,3S,5R,6S)-3,5-dihydroxy...

4

Catalyst/TT Error

http://www.smid-db.org/detail/ascr#3

No information available for SMID ascr.

5

SMID-DB

http://www.smid-db.org/download

The SMID DB batch file and structure files can be obtained by emailing smid-db@cornell.edu. Or by using the links below. Metabolite structure files can be downloaded individually from GitHub. The batch file containing all SMID entries can be downloaded here. By right clicking and selecting "Save Link As.".

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LINKS TO THIS WEBSITE

staging.wormbase.org staging.wormbase.org

C. remanei (BioProject PRJNA53967): 20 kbp from Crem_Contig0:40,000..60,000

http://staging.wormbase.org/tools/genome/gbrowse/c_remanei_PRJNA53967

Dump selection as FASTA. Browse selection at UCSC. Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientistsâ Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded featuresâ Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and moreâ Find out more.

staging.wormbase.org staging.wormbase.org

O. volvulus (BioProject PRJEB513): 647 bp from OVOC_OO_000075:13,773..14,419

http://staging.wormbase.org/tools/genome/gbrowse/o_volvulus_PRJEB513

Dump selection as FASTA. Browse selection at UCSC. Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientistsâ Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded featuresâ Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and moreâ Find out more.

staging.wormbase.org staging.wormbase.org

C. briggsae (BioProject PRJNA10731): 30 kbp from I:50,000..80,000

http://staging.wormbase.org/tools/genome/gbrowse/c_briggsae_PRJNA10731

Dump selection as FASTA. Browse selection at UCSC. Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientistsâ Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded featuresâ Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and moreâ Find out more.

staging.wormbase.org staging.wormbase.org

C. brenneri (BioProject PRJNA20035): 30 kbp from Cbre_Contig0:30,000..60,000

http://staging.wormbase.org/tools/genome/gbrowse/c_brenneri_PRJNA20035

Dump selection as FASTA. Browse selection at UCSC. Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientistsâ Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded featuresâ Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and moreâ Find out more.

staging.wormbase.org staging.wormbase.org

C. japonica (BioProject PRJNA12591): 20 kbp from Cjap.Contig2:10,000..30,000

http://staging.wormbase.org/tools/genome/gbrowse/c_japonica_PRJNA12591

Dump selection as FASTA. Browse selection at UCSC. Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientistsâ Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded featuresâ Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and moreâ Find out more.

staging.wormbase.org staging.wormbase.org

C. remanei - WormBase : Nematode Information Resource

http://staging.wormbase.org/species/c_remanei

Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientists Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded features Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and more Find out more. Data Mining and Batch Queries. Top 3 most used tools.

staging.wormbase.org staging.wormbase.org

C. briggsae - WormBase : Nematode Information Resource

http://staging.wormbase.org/species/c_briggsae

Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientists Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded features Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and more Find out more. Data Mining and Batch Queries. Top 3 most used tools.

staging.wormbase.org staging.wormbase.org

S. ratti - WormBase : Nematode Information Resource

http://staging.wormbase.org/species/s_ratti

Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientists Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded features Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and more Find out more. Data Mining and Batch Queries. Top 3 most used tools.

staging.wormbase.org staging.wormbase.org

WormBase : Nematode Information Resource

http://staging.wormbase.org/tools/queries

Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientists Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded features Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and more Find out more. Data Mining and Batch Queries. Top 3 most used tools.

staging.wormbase.org staging.wormbase.org

Species - WormBase : Nematode Information Resource

http://staging.wormbase.org/species/all

Welcome to WormBase - need help. WormBase is an international consortium of biologists and computer scientists Find out more. Want to know more about worm research? Caenorhabditis Genetics Center (CGC). Start here to access encyclopedic information about the worm genome and its genes, proteins, and other encoded features Find out more. Come explore WormBase's complex collection of information with a variety of bioinformatic tools and more Find out more. Data Mining and Batch Queries. Top 3 most used tools.

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Welcome to the Small Molecule Identifier Database (SMID DB). Entifiers) represent gene-style identifiers for small molecules newly identified in C. elegans. And other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. Why do we need SMIDs? How to cite SMID DB. SMID-DB.org is operating in beta-mode. Please report any errors to smid-db@cornell.edu.

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