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Solve/Resolve: Automated structure determination for macromolecular crystallography

SOLVE/RESOLVE website with documentation and software downloads

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Solve/Resolve: Automated structure determination for macromolecular crystallography | solve.lanl.gov Reviews
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SOLVE/RESOLVE website with documentation and software downloads
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Solve/Resolve: Automated structure determination for macromolecular crystallography | solve.lanl.gov Reviews

https://solve.lanl.gov

SOLVE/RESOLVE website with documentation and software downloads

INTERNAL PAGES

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1

Resolve Sample Scripts

https://solve.lanl.gov/Resolve/html_resolve_manual/resolve_sample_scripts.htm

RESOLVE Table of Contents. Index for RESOLVE Manual. Sample scripts for resolve. The minimal script for running RESOLVE (on experimental data). Keywords for running RESOLVE with a different input file. Running RESOLVE with different numbers of cycles or resolution. Running RESOLVE with NCS. Prime-and-switch phasing starting from an MR model. Iterative model-building (starting from solve.mtz, solve image.mtz or an MR model)and refinement with RESOLVE and refmac5. Density modification using local patterns.

2

SOLVE Home

https://solve.lanl.gov/Solve/solve.html

License for SOLVE/ RESOLVE. Solve Table of Contents. Armadillo repeat of beta-catenin. Granulocyte-macrophage colony stimulating factor. SOLVE/RESOLVE electron density map calculated after automatic solution at 2.4 A of a MAD structure with 56 selenium atoms followed by automatic maximum-likelihood density modification. Data and model courtesy of Ward Smith and Cheryl Janson. Graphics made with Alwyn Jone's O. What can SOLVE do? And look at the on-line manual. SOLVE now will analyze your MAD/SAD data to ...

3

Solve/RESOLVE download

https://solve.lanl.gov/download.html

License for SOLVE/ RESOLVE. Downloading and upgrading SOLVE/RESOLVE. The current version of the SOLVE/RESOLVE package is version 2.13. Please note: One license. Is good for all machines at your institution for all versions from 2.00 to 2.99 (it goes in solve2.access and the upgrade is free for academic/non-profits). There are three easy parts to installing SOLVE/RESOLVE on your system:. You need to figure out which version of SOLVE/RESOLVE matches your system. If your computer is a. Alpha running Digital...

4

Solve/Resolve License

https://solve.lanl.gov/license.html

License for SOLVE/ RESOLVE. US Universities, non-profits, other non-governmental institutions. A one-time $500 license fee is good for versions 2.00 to 2.99 for all machines at your institution. You can get a free 45-day trial license, too. For US. government institutions, the SOLVE/RESOLVE license is free of charge. One license is good for versions 2.00 to 2.99 for all machines at your institution. Non-US. Non-commercial institutions. Non-US. Commercial institutions. Los Alamos National Laboratory.

5

Solve sample scripts

https://solve.lanl.gov/Solve/manual/sample_scripts/script_list.html

SOLVE Table of Contents. Sample scripts for SOLVE. Choose one of the following sample control files, edit it to match your data (you may need to check on data formats. And run SOLVE with it. You can watch SOLVE run by looking at the end of the solve.status. With tail -30f solve.status. This file will tell you where to look if something got typed in wrong and it will keep you informed about the structure determination as it goes. Note in particular the keywords. Under lambda 1 or derivative 1 specify.

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bioxtal.spring8.or.jp bioxtal.spring8.or.jp

構造生物学ビームライン

http://bioxtal.spring8.or.jp/ja/links/links_ja.html

SPring-8 Public User Information. The D-Cha interface is customized for Firefox version 2 or above. From outside of SPring-8, use https and a digital certificate is required. RIKEN Structural Genomics and Structural Biology Beamlines. Structural Biology Research Center. Intensity Integration of Diffraction Images. Shake and Bake (SnB). X-ray Form Factor, Attenuation, and Scattering Tables, NIST. The Dundee PRODRG2 Server.

lilith.nec.aps.anl.gov lilith.nec.aps.anl.gov

NECAT Home Page

http://lilith.nec.aps.anl.gov/Facilities/Sector24techSpecs.htm

PDR I and II. HKL 2000 Def Files. ID-E beamline (Q315 CCD). End of Run Form. Sample Placement Robot Manual. PILATUS 6MF Detector Publications. NECAT Work Alone Policy. ANL ESH Manual (Onsite Visible ONLY). The Northeastern Collaborative Access Team (NE-CAT) facility at the Advanced Photon Source. At Argonne National Laboratory. Is managed by Cornell University. And consists of seven member institutions:. Memorial Sloan-Kettering Cancer Center. Massachusetts Institute of Technology. NIGMS at a Glance.

necat.chem.cornell.edu necat.chem.cornell.edu

NECAT Home Page

http://necat.chem.cornell.edu/userprogram/calendar.htm

PDR I and II. HKL 2000 Def Files. ID-E beamline (Q315 CCD). End of Run Form. Sample Placement Robot Manual. PILATUS 6MF Detector Publications. NECAT Work Alone Policy. APS Safety and Training. ANL ESH Manual (Onsite Visible ONLY). The Northeastern Collaborative Access Team (NE-CAT) facility at the Advanced Photon Source. At Argonne National Laboratory. Is managed by Cornell University. And consists of seven member institutions:. Memorial Sloan-Kettering Cancer Center. Massachusetts Institute of Technology.

necat.chem.cornell.edu necat.chem.cornell.edu

NECAT Home Page

http://necat.chem.cornell.edu/userprogram/travellodge.htm

PDR I and II. HKL 2000 Def Files. ID-E beamline (Q315 CCD). End of Run Form. Sample Placement Robot Manual. PILATUS 6MF Detector Publications. NECAT Work Alone Policy. APS Safety and Training. ANL ESH Manual (Onsite Visible ONLY). The Northeastern Collaborative Access Team (NE-CAT) facility at the Advanced Photon Source. At Argonne National Laboratory. Is managed by Cornell University. And consists of seven member institutions:. Memorial Sloan-Kettering Cancer Center. Massachusetts Institute of Technology.

necat.chem.cornell.edu necat.chem.cornell.edu

NECAT Home Page

http://necat.chem.cornell.edu/Facilities/Sector24techSpecs.htm

PDR I and II. HKL 2000 Def Files. ID-E beamline (Q315 CCD). End of Run Form. Sample Placement Robot Manual. PILATUS 6MF Detector Publications. NECAT Work Alone Policy. APS Safety and Training. ANL ESH Manual (Onsite Visible ONLY). The Northeastern Collaborative Access Team (NE-CAT) facility at the Advanced Photon Source. At Argonne National Laboratory. Is managed by Cornell University. And consists of seven member institutions:. Memorial Sloan-Kettering Cancer Center. Massachusetts Institute of Technology.

necat.chem.cornell.edu necat.chem.cornell.edu

NECAT Home Page

http://necat.chem.cornell.edu/Facilities/ChemLab.htm

PDR I and II. HKL 2000 Def Files. ID-E beamline (Q315 CCD). End of Run Form. Sample Placement Robot Manual. PILATUS 6MF Detector Publications. NECAT Work Alone Policy. APS Safety and Training. ANL ESH Manual (Onsite Visible ONLY). The Northeastern Collaborative Access Team (NE-CAT) facility at the Advanced Photon Source. At Argonne National Laboratory. Is managed by Cornell University. And consists of seven member institutions:. Memorial Sloan-Kettering Cancer Center. Massachusetts Institute of Technology.

hartlab.uthscsa.edu hartlab.uthscsa.edu

The University of Texas Health Science Center - X-ray Crystallography Core Laboratory

http://hartlab.uthscsa.edu/publications.php

Crystallization Screens Available to the Lab. Expression of a selenomethionine variant in E. coli. General molecular biology methods. Biological Macromolecule Crystallization Database. DynDom - Protein Domain Movement. PARVATI - Protein Anisotropic Refinement Validation and Analysis Tool. PDB Structure Validation Server. SAVS - Structure Analysis and Verification Server. STAN - Structure Analysis Server. Uppsala Software Factory - Crystallography Tools. WHATCHECK - Structure validation. J Biol. Chem.

hkl-3000.org hkl-3000.org

HKL-3000SM INSTALLATION

http://hkl-3000.org/Installation.html

The HKL-3000 program is available for and was tested on the following platforms:. Red Hat Fedora 8 to 14 32-bit and 64-bit versions. Ubuntu 8.04 LTS to 14.04 LTS 32-bit and 64-bit (requires ia32-libs package) versions. Red Hat Enterprise Linux 4 to 6 32-bit and 64-bit versions. Mac OS X 10.6 (Snow Leopard) to 10.10 (Yosemite). HKL-3000 interacts with external crystallography programs that must be installed prior to HKL-3000 installation, including:. Shelx-97 or Shelx-2015 (. Coot 0.8 (. The process of ex...

sibyls.als.lbl.gov sibyls.als.lbl.gov

The SIBYLS Beamline: Macromolecular Crystallography Programs

http://sibyls.als.lbl.gov/xtalprogs/xtalprogs.php

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Solve/Resolve: Automated structure determination for macromolecular crystallography

License for SOLVE/ RESOLVE. SOLVE/RESOLVE electron-density map and auto-built atomic model for initiation factor 5a at a resolution of 2.1A. Multiwavelength diffraction data courtesy of Tom Peat; refinement with Garib Murshudov's refmac5. Graphics drawn with Alwyn Jones' O. Automated crystallographic structure solution for MIR, SAD, and MAD. Statistical density modification, local pattern matching, automated model-building, automated ligand-fitting, and prime-and-switch minimum bias phasing. You can run ...

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SOLVE

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