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Molecular Evolution, Phylogenetics and Epidemiology

This is a site for various projects in evolutionary biology, molecular evolution and phylogenetic epidemiology being carried out by members of the research group of Andrew Rambaut at the Institute of Evolutionary Biology, University of Edinburgh.

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Molecular Evolution, Phylogenetics and Epidemiology | tree.bio.ed.ac.uk Reviews
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This is a site for various projects in evolutionary biology, molecular evolution and phylogenetic epidemiology being carried out by members of the research group of Andrew Rambaut at the Institute of Evolutionary Biology, University of Edinburgh.
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4 molecular phylogeny
5 molecular phylogenetics
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Molecular Evolution, Phylogenetics and Epidemiology | tree.bio.ed.ac.uk Reviews

https://tree.bio.ed.ac.uk

This is a site for various projects in evolutionary biology, molecular evolution and phylogenetic epidemiology being carried out by members of the research group of Andrew Rambaut at the Institute of Evolutionary Biology, University of Edinburgh.

INTERNAL PAGES

tree.bio.ed.ac.uk tree.bio.ed.ac.uk
1

Publications

http://tree.bio.ed.ac.uk/publications

Molecular evolution, phylogenetics and epidemiology. Virus and Pathogen Evolution. Molecular Evolution and Phylogenetic Analyses. Evolutionary Inference, Phylogenetic Methods, Population Genetic Models. The Comparative Method and Macro-Evolutionary Models. General Evolutionary Biology and Ecology. Luiz Fagundes de Carvalho. Virus and Pathogen Evolution. Exploring the temporal structure of heterochronous sequences using TempEst. Lam TT, de Carvalho LM and Pybus OG (2016) Virus Evolution. Catherine Hogan, ...

2

Seq-Gen

http://tree.bio.ed.ac.uk/software/seqgen

Molecular evolution, phylogenetics and epidemiology. Latest Version - v1.3.3. Bug fixes and an additional amino acid model (mtArt). Seq-Gen.v1.3.3.tgz. UNIX/Linux version - Source code only. Requires ANSI C compiler to compile. This version could also be compiled for Windows or MacOS X - 60KB. MtArt amino acid model added by Lars Jermiin. Memory allocation bugs (thanks to Graham Jones for submitting a fix). 2011-10-28 - v1.3.3. Bug fixes and an additional amino acid model (mtArt). 2004-09-10 - v1.3.

3

Transmission and Evolution of the Middle East Respiratory Syndrome Coronavirus in Saudi Arabia - a descriptive prospective genomic genomic study

http://tree.bio.ed.ac.uk/publications/443

Molecular evolution, phylogenetics and epidemiology. Virus and Pathogen Evolution. Molecular Evolution and Phylogenetic Analyses. Evolutionary Inference, Phylogenetic Methods, Population Genetic Models. The Comparative Method and Macro-Evolutionary Models. General Evolutionary Biology and Ecology. Luiz Fagundes de Carvalho. Transmission and Evolution of the Middle East Respiratory Syndrome Coronavirus in Saudi Arabia - a descriptive prospective genomic genomic study. Zumla AI and Memish ZA. 50% genome co...

4

Tracer

http://tree.bio.ed.ac.uk/software/tracer

Molecular evolution, phylogenetics and epidemiology. Latest Version - v1.6. Now supports skygrid analysis and does KDE density plots. Tracer v1.6.dmg. Macintosh OS X executable version. This requires Java 1.5 or better. Tracer v1.6.zip. Windows executable version. This is a ZIP archive. Tracer v1.6.tgz. Java executable version. Will run on any system with Java 1.5 or better installed, including Linux and Mac OS X. This archive is tarred and gzipped. By Andrew Rambaut, Marc Suchard and Alexei Drummond.

5

FigTree

http://tree.bio.ed.ac.uk/software/figtree

Molecular evolution, phylogenetics and epidemiology. Latest Version - v1.4.2. FigTree v1.4.2.dmg. Macintosh OS X executable version. This requires Java 1.6 or better which is installed by Mac OS X Snow Leopard (10.6). FigTree v1.4.2.zip. Windows executable version. This is a ZIP archive. FigTree v1.4.2.tgz. Java executable version. Will run on any system with Java 1.5 or better installed, including Linux and Mac OS X. This archive is tarred and gzipped. Issue 75: Export PNG and JPEG produce blank images.

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andersen-lab.com andersen-lab.com

Members | Andersen Lab

http://andersen-lab.com/people

Dudes & Dudettes. Dudes & Dudettes. Kristian G. Andersen. Assistant Professor, TSRI. Director of Infectious Disease Genomics, STSI. Affiliated Member, Broad Institute of MIT and Harvard. MRC Laboratory of Molecular Biology. Senior Administrative Assistant, TSRI. More than 20 years in industry and academia. Joined the Scripps Research Institute in 1999. Cat herding Junior PIs. Having fun at the Beach. Lab Manager, TSRI. Advisors: David Pride; Hendrik Nollens. UC Davis and San Diego State University.

hiv.bio.ed.ac.uk hiv.bio.ed.ac.uk

Leigh Brown HIV Research Group; University of Edinburgh: People

http://hiv.bio.ed.ac.uk/people.html

SCHOOL OF BIOLOGICAL SCIENCES. Prof Andrew Leigh Brown. Room 66, Ashworth Laboratories, West Mains Road, Edinburgh,. Room 65, Ashworth Laboratories, West Mains Road, Edinburgh,. Room 65, Ashworth Laboratories, West Mains Road, Edinburgh,. Room 65, Ashworth Laboratories, West Mains Road, Edinburgh,. UK HIV Resistance Study. Dr Sergei Kosakovsky Pond. Former students and post-docs.

samuelcrane.com samuelcrane.com

Blog — Samuel N. Crane

http://samuelcrane.com/blog

Samuel N. Crane. New York, NY. Samuel N. Crane. Comparative Biology as Data Science. March 15, 2015. Alaska brown bear, specimen measurement chart,. AMNH Digital Special Collections. I recently spoke at the American Museum of Natural History on the topic of alternative academic careers for biologists. The talk was organized by the Museum’s graduate school. For its current graduate students and postdocs. Also on the agenda was Eric Vieira. Anyway, here are the slides: http:/ rpubs.com/snc/compbio. Once ag...

ichair-flu.mvm.ed.ac.uk ichair-flu.mvm.ed.ac.uk

Interdisciplinary Centre for Human & Avian Influenza Research (ICHAIR)

http://www.ichair-flu.mvm.ed.ac.uk/people.htm

Interdisciplinary Centre for Human and Avian Influenza Research (ICHAIR). Finding new ways of preventing another flu pandemic. 8211; Population Dynamics and Virus Evolution. 8211; Virus-host interactions in disease pathogenesis. 8211; Control of Infection and Disease. Executive Committee, Scientific Advisory Board. Theme 1 – Population Dynamics and Virus Evolution. Prof Andrew LEIGH BROWN. Theme 2 – Virus-host interactions in disease pathogenesis. Director and Principal Investigator.

phylogenetictrees.com phylogenetictrees.com

Phylogenetic Tree

http://www.phylogenetictrees.com/links.php

Joe Felsenstein's list of phylogeny programs:. David Robertson's Research Group:. WebPSSM is a bioinformatic tool for predicting HIV-1 coreceptor usage from the amino acid sequence of the third variable loop (V3) of the envelope gene. . The HIV databases contain data on HIV genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials. The website also gives access to a large number of tools that can be used to analyze these data. . PubMed is a service of the U.S...

wired.com wired.com

Swine Flu Genes Show Virus May Be Weak | WIRED

http://www.wired.com/wiredscience/2009/05/swinefluglimpse

Skip to: Start of article. Go to Wired Home Page. Swine Flu Genes Show Virus May Be Weak. Subscribe now to get. 6 months for $5 - plus a FREE Portable. WIRED's biggest stories, delivered to your inbox. Tesla's cars have driven 140 million miles on autopilot. Here's how: bit.ly/2bq1pdy. Don't miss our latest news, features and videos. See what's inspiring us. Don't miss out on WIRED's latest videos. Skip Article Header. Skip to: Start of Article. Date of Publication: 05.04.09. Time of Publication: 1:46 pm.

obbard.bio.ed.ac.uk obbard.bio.ed.ac.uk

Obbard Lab: Insects, Viruses, Genome evolution

http://obbard.bio.ed.ac.uk/index.html

Insects, Viruses, Genome evolution. We are based in the Institute of Evolutionary Biology ( IEB. And we're associated with the Centre for Immunity, Infection and Evolution ( CIIE. At the University of Edinburgh. Our research focuses on the demography, population genetics and genome evolution of. S naturally occurring viruses, and on the evolution of antiviral and other immunity genes in Drosophila. The work we do on Drosophila. Viruses is done in collaboration with Paul Sharp. It is striking that RNAi ge...

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Beakhust - webtrees

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Heberlein-Fogarty Family Tree

Our Family Genealogy Pages. George Steeb, 1891-1988. Welcome to our tree online. Edward Michael Behen, Jr - Helen Elizabeth Voss wedding, 14 June 1922. Parents: Edward Behen and Frances Stillwagen-Behen. Parents: John Henry Voss and Loiuse Moormann-Voss. Top 100 Surnames in Our Family Tree. This site powered by The Next Generation of Genealogy Sitebuilding. V 1011, written by Darrin Lythgoe 2001-2015.

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ERROR 404 - PAGE NOT FOUND. Why am I seeing this page? 404 means the file is not found. If you have already uploaded the file then the name may be misspelled or it is in a different folder. You may get a 404 error for images because you have Hot Link Protection turned on and the domain is not on the list of authorized domains. Are you using WordPress? See the Section on 404 errors after clicking a link in WordPress. How to find the correct spelling and folder. Missing or Broken Files. Notice that the CaSe.

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Molecular Evolution, Phylogenetics and Epidemiology

Molecular evolution, phylogenetics and epidemiology. Molecular Evolution, Phylogenetics and Epidemiology. Research themes and grants. Evolution and phylogenetics Software. Publications from the group. How to find us. This site is for the research, software and publications of Andrew Rambaut and members of his research group. The BEAST software package has its own website: http:/ beast.bio.ed.ac.uk. This includes a new section on the novel human 2c genotype coronavirus. Faria NR, Rambaut A. Garry RF, Khan...

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Современный сайт Харькова - Tree.biz.ua (Три Биз Юа)

Введите ключевые слова для поиска. Rao vat mien phi. Dao tao cu nhan dai hoc. В городе переименовали почти 200 объектов (список). Харьковский горсовет принял решение о переименовании топографических объектов. В итоге новые названия получили 173 улицы, 4 парка и одна станция метро ("Советская" в "Площадь Конституции"). За это проголосовало 83 из 84 депутатов. Самые интересные мероприятия, которые будут проходить в городе в выходные дни. Теперь при оформлении автомобиля не нужна справка-счет. 23 - 25 ноября.

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Gavin Pretor-Pinney, Bill Sanderson. 1:01 pm 11 May 2013. Apparently i'm officially collecting copies of pride and prejudice now? 2:10 am 16 April 2013. Ceremony in Death (In Death 05). 9:15 pm 7 April 2013. I really wish roberts would stay out of the whole wicca religion. she doesn't use christianity or judaism as a plot device, so i don't know why she thinks it's okay to do so with wicca. 9:15 pm 7 April 2013. Conspiracy in Death (In Death 08). 9:15 pm 7 April 2013. 3:25 pm 7 April 2013. I'm astonished...