aleaves.cdb.riken.jp

aLeaves - first step to build zoologically informative phylogenetic trees

First step to build zoologically informative phylogenetic trees. Allows you to collect homologs of the sequence of your interest. Those sequences can be passed on to the web server for sophisticated multiple alignment, and then to tree building. This initial process one can perform here is just like collecting leaves. Termini of trees) from diverse a. Nimals. This is why we designated this tool ' aLeaves. Start the search (powered by NCBI Blast. Enter your "query" peptide. Sequence in the fasta format.

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aLeaves - first step to build zoologically informative phylogenetic trees | aleaves.cdb.riken.jp Reviews

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First step to build zoologically informative phylogenetic trees. Allows you to collect homologs of the sequence of your interest. Those sequences can be passed on to the web server for sophisticated multiple alignment, and then to tree building. This initial process one can perform here is just like collecting leaves. Termini of trees) from diverse a. Nimals. This is why we designated this tool ' aLeaves. Start the search (powered by NCBI Blast. Enter your query peptide. Sequence in the fasta format.

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aLeaves - first step to build zoologically informative phylogenetic trees | aleaves.cdb.riken.jp Reviews

https://aleaves.cdb.riken.jp

First step to build zoologically informative phylogenetic trees. Allows you to collect homologs of the sequence of your interest. Those sequences can be passed on to the web server for sophisticated multiple alignment, and then to tree building. This initial process one can perform here is just like collecting leaves. Termini of trees) from diverse a. Nimals. This is why we designated this tool ' aLeaves. Start the search (powered by NCBI Blast. Enter your "query" peptide. Sequence in the fasta format.

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aleaves.cdb.riken.jp

1

aLeaves - first step to build trees

http://aleaves.cdb.riken.jp/aleaves/database.html

First step to build zoologically informative phylogenetic trees. Phylogenetic ranges of available individual databases secondarily compiled are shown in the tree below. Descriptions of the original sources of the above databases are given below. Human peptides registered in RefSeq. Were downloaded from NCBI Protein on June 20, 2016. All 'known' human peptide sequences. Were downloaded from the Ensembl FTP site. Non-human eutherians - Ensembl 84. Were downloaded from the Ensembl FTP site. Cartilaginous fi...

2

aLeaves - first step to build trees

http://aleaves.cdb.riken.jp/aleaves/faq.html

First step to build zoologically informative phylogenetic trees. Only one peptide sequence is accepted. The length of the query sequences should be 10 to 40,000 amino acids. Select at least one database. For the search. Phylogenetic coverage of the listed databases is visually indicated in the ' Database. Page Please note that selecting many or large databases will result in more computational time. Input the number of sequences you want. Input the search threshold E-value. Where you can view and downloa...

3

aLeaves - first step to build zoologically informative phylogenetic trees

http://aleaves.cdb.riken.jp/aleaves/index.html

First step to build zoologically informative phylogenetic trees. Allows you to collect homologs of the sequence of your interest. Those sequences can be passed on to the web server for sophisticated multiple alignment, and then to tree building. This initial process one can perform here is just like collecting leaves. Termini of trees) from diverse a. Nimals. This is why we designated this tool ' aLeaves. Start the search (powered by NCBI Blast. Enter your "query" peptide. Sequence in the fasta format.

4

aLeaves - first step to build trees

http://aleaves.cdb.riken.jp/aleaves/links.html

First step to build zoologically informative phylogenetic trees. Basic local alignment search tool. Visualization, analysis, and editing of phylogenetic trees.

5

aLeaves - first step to build trees

http://aleaves.cdb.riken.jp/aleaves/about.html

First step to build zoologically informative phylogenetic trees. Basic concept - why aLeaves. The history of every gene in the human genome, as well as every gene that was lost before the establishment of the human genome, is traceable by collecting homologs of the gene of particular interest. This web server allows researchers and even non-researchers to explore protein-coding landscape of vertebrate genomes. Center for Life Science Technologies, RIKEN in Kobe, Japan. Project is funded by RIKEN. For fur...

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mafft.cbrc.jp

MAFFT - a multiple sequence alignment program

http://mafft.cbrc.jp/alignment/software

Multiple alignment program for amino acid or nucleotide sequences. MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of ∼200 sequences), FFT-NS-2 (fast; for alignment of ∼30,000 sequences), etc. The latest version is 7.304 (2016/Aug/12). Fasta format. example1 (LSU rRNA). The type of input sequences (amino acid or nucleotide) is automatically recognized. If not sure which option to use,. A simp...

originally4.blogspot.com

Originally 4: Japanese lamprey gene set now available at aLeaves

http://originally4.blogspot.com/2013/12/japanese-lamprey-gene-set-now-available.html

Myths, thoughts and facts about genes and genomes of vertebrates (especially jawless fishes and cartilaginous fishes). Saturday, December 28, 2013. Japanese lamprey gene set now available at aLeaves. As announced in the change log. I have included the predicted gene set of the Japanese lamprey ( Lethenteron japonicum. In the database #6 of aLeaves. The homolog collection tool I have been maintaining. Read more posts about . Link - next-gen seq. NGS at Nat Biotech. Nat Meth Sequencing Archive.

originally4.blogspot.com

Originally 4: Sea Lamprey Consortium Gene Set at aLeaves

http://originally4.blogspot.com/2013/09/sea-lamprey-consortium-gene-set-at.html

Myths, thoughts and facts about genes and genomes of vertebrates (especially jawless fishes and cartilaginous fishes). Thursday, September 12, 2013. Sea Lamprey Consortium Gene Set at aLeaves. The other day I updated the web server I am maintaining, aLeaves. To include latest information for protein-coding genes based on public genome databases. At aLeaves now includes the Ensembl gene set and the consortium gene set for the sea lamprey ( Petromyzon marinus. Read more posts about . Link - next-gen seq.

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aLeaves - first step to build zoologically informative phylogenetic trees

First step to build zoologically informative phylogenetic trees. Allows you to collect homologs of the sequence of your interest. Those sequences can be passed on to the web server for sophisticated multiple alignment, and then to tree building. This initial process one can perform here is just like collecting leaves. Termini of trees) from diverse a. Nimals. This is why we designated this tool ' aLeaves. Start the search (powered by NCBI Blast. Enter your "query" peptide. Sequence in the fasta format.

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