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BacMet: Antibacterial Biocide and Metal Resistance Genes DatabaseAntibacterial biocide and metal resistance genes database
http://bacmet.biomedicine.gu.se/
Antibacterial biocide and metal resistance genes database
http://bacmet.biomedicine.gu.se/
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BacMet: Antibacterial Biocide and Metal Resistance Genes Database | bacmet.biomedicine.gu.se Reviews
https://bacmet.biomedicine.gu.se
Antibacterial biocide and metal resistance genes database
bacmet.biomedicine.gu.se
BacMet database browsing
http://bacmet.biomedicine.gu.se/browse_by_MRG.pl
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. Browsing Experimetal Confirmed database by metal resistance genes. BacMet database and website is designed and maintained by Chandan Pal.
BacMet Database - Browsing
http://bacmet.biomedicine.gu.se/browse_by_other_compounds.pl
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. Browsing Experimetal Confirmed database by biocides. Carbonylcyanide m-chlorophenyl hydrazone (CCCP). BacMet database and website is designed and maintained by Chandan Pal.
BacMet database browsing
http://bacmet.biomedicine.gu.se/browse_by_BRG.pl
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. Browsing Experimetal Confirmed database by biocide resistance genes. BacMet database and website is designed and maintained by Chandan Pal.
BacMet Database - Home
http://bacmet.biomedicine.gu.se/browse_by_metals.pl
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. Browsing Experimetal Confirmed database by metals. BacMet database and website is designed and maintained by Chandan Pal.
BacMet Database - Home
http://bacmet.biomedicine.gu.se/download_temporary.html
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes with Both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. Database resources to download. BacMet (version 1.1). Download all files.zip. Download the BacMet-Scan script file.pl. Download BacMet Experimentally Confirmed Resistance Genes Dataset.fasta. Downlo...
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Summary of 2010 - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/yearly/summary-of-2010
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Paperwise, results have still not been satisfying, but hopefully this will change in 2011. However, two posters at two workshops have shown preliminary results from these projects. In both cases we expect to be able to finish interesting papers during the first half of 2011. On the social side, I have finished a new Lost Shadow album ( Phonocratic Records. Member of the Departme...
Scripts - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software/scripts
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Here is a collection my smart shell and perl scripts. Feel free to download and use my solutions. All software distributed through this page is free for non-commercial use and copying. Blastgrep This utility allows you to grep for pattern matches but on query-basis in BLAST reports. So, if you would like to find all. Version 1.0.2). After download, move the files to a place wher...
Summary of 2011 - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/yearly/summary-of-2011
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. And one tool that is soon to be publicly unveiled. And Erik Kristiansson, who I will be working with for the next four years. In publications, there is a lot in the pipeline, but the only thing I managed to squeeze out before the new year was the paper on the bioinformatics tool Metaxa. Bengtsson J, Eriksson KM, Hartmann M, Wang Z, Shenoy BD, Grelet G, Abarenkov K, Petri A, Alm ...
GoBiG 2013 Schedule and News - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/gobig/gobig-2013/gobig-2013-schedule-and-news
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. GoBiG 2013 Schedule and News. I hope you have all had a nice Christmas and New Years holiday. Right before Christmas, we had a GoBiG meeting in student seminar form, but we also made some important decisions for GoBiG in 2013. The details for that is outlined below. 1 Schedule for the Spring 2013 GoBiG Meetings. Thursday, January 31 (Master of Article: Kemal Sanli). Having an op...
Software - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. A software package for automated identification and classification of small subunit (SSU) rRNA sequences from archaea, bacteria, eukaryotes, chloroplasts and mitochondria in metagenomic and environmental sequencing data sets. A software tool for detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing.
Summary of 2013 - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/yearly/summary-of-2013
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. One on the BacMet database. Which actually will be noted as a 2014 paper), and I have also been a co-author on a paper paving the way for better fungal systematics, related to the UNITE database. In addition, I have also published an entry in the Encyclopedia of Metagenomics on Metaxa. At the end of the year, there were some nice funding news for our group as well! We got 11....
Megraft - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software/megraft
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Megraft: A software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes. Published in Research in Microbiology. Volume 163, Issues 6 7 (2012), 407 412. Doi: 10.1016/j.resmic.2012.07.00. Download the Megraft package. Version 1.0.2). About 4 years ago.
Metaxa FAQ - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software/metaxa/metaxa-faq
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. This FAQ intends to answer some of the questions we have gotten about the Metaxa software package. Please look through this document before contacting me with a question. If the FAQ does not answer your question, you are very welcome to send an e-mail with the question to metaxa [at] microbiology [dot] se The FAQ can also be downloaded as a PDF here. Does Metaxa work on Windows?
Metaxa - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/software/metaxa
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Metaxa: A software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets. Antonie van Leeuwenhoek Journal of Microbiology. Download the Metaxa package. Version 1.1.2). Updated for version 1.1.2! 16th December 2011 1...
GoBiG 2013 - Microbiology, Metagenomics and Bioinformatics
http://microbiology.se/gobig/gobig-2013
Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Thursday, January 31 (Master of Article: Kemal Sanli). Wednesday, February 27 (MoA: José Sanchez). Tuesday, March 19 (MoA: Chandan Pal). Monday, April 22 (MoA: Francesco Gatto). Thursday, May 30 (MoA: Amir Feizi). Wednesday, June 19 (Spring Special Meeting). Thursday, September 26 (MoA: Johan Bengtsson-Palme). Wednesday, October 30 (MoA: Chandan Pal). Jonathan A. Eisen.
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BacMet: Antibacterial Biocide and Metal Resistance Genes Database
By Biocide Resistance Genes. By Metal Resistance Genes. By Genes that have both Biocide and Metal Resistance Potential. Total BacMet Experimentally Confirmed Database. By Biocide Resistance Genes. By Metal Resistance Genes. By Genes that have both Biocide and Metal Resistance Potential. Total BacMet Predicted Database. BacMet is an easy-to-use bioinformatics resource of antibacterial biocide- and metal-resistance genes. BacMet consists of two databases:. Database of automatically predicted. BacMet databa...
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