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Gary Bader c omputational biology lab homepage at the University of Toronto, Canada.

http://www.baderlab.org/

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University of Toronto

Gary Bader

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To●●to , Ontario, M5S3E1

CA

1.41●●●●3935
ga●●●●●●●●@utoronto.ca

View this contact

University of Toronto

Gary Bader

160 Col●●●●●●●t. #602

To●●to , Ontario, M5S3E1

CA

1.41●●●●3935
ga●●●●●●●●@utoronto.ca

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Home - Bader Lab @ The University of Toronto | baderlab.org Reviews

https://baderlab.org

Gary Bader c omputational biology lab homepage at the University of Toronto, Canada.

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Index of /

2018-03-02 00:26 - GeneMANIA/. 2017-04-27 11:20 - pgx/. 2017-02-21 18:03 - PathwayCommons/. 2016-05-09 12:44 - EM GSEA/. 2016-03-09 18:14 - INOH/. 2015-08-07 16:14 - BreastCancer/. 2014-11-24 03:32 - PTMvar/. 2014-10-31 18:01 - StemCellProject/. 2014-05-20 20:41 - README.html. 2014-05-20 20:32 166 BINDTranslation/. 2014-05-20 20:32 - PDZ/. 2014-05-20 20:30 - KEGG.tar.gz. 1970-01-01 00:00 1.5G.

cytoweb.baderlab.org cytoweb.baderlab.org

Cytoscape Web

This project has been replaced by Cytoscape.js. And is no longer active. Easily embed interactive networks in your website with Cytoscape Web. Cytoscape Web is . Component that allows you to. Easily integrated in HTML via its. It loads and how it. Project to which anyone can contribute. Cytoscape Web is modelled after the Cytoscape Java. Network visualization and analysis software. Please visit Cytoscape.org. To find out more. Cytoscape Web development is funded by Genome Canada.

INTERNAL PAGES

baderlab.org baderlab.org
1

RecentChanges - Bader Lab @ The University of Toronto

http://www.baderlab.org/RecentChanges

Last updated at 2009-07-07 00:48:19. No quotes on FortuneCookies. Upload of attachment 'MAC UTO.jpg'. Attachment 'MAC UTO.jpg' deleted. Upload of attachment 'MAC UTO.jpg'. Upload of attachment 'MAC UTO.jpg'. Upload of attachment 'StemCellJuly2016.pd f'. Upload of attachment 'aa user guide 7.png '. Attachment 'aa user guide 7.png ' deleted. Upload of attachment 'aa user guide 6.png '. Attachment 'aa user guide 6.png ' deleted. Marks pages edited since you set your bookmark (click for a bookmark diff).

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Home - Bader Lab @ The University of Toronto

http://www.baderlab.org/Home

Predicting biologically relevant protein interactions and cellular network evolution. Detection of cell type and stage active biological processes using molecular profiles. Multiple perturbation analysis to map cellular systems. Biological pathway and network databases and analysis tools. More about our research. Or view our research interests as art. Watch the Inner Life of the Cell movie from Harvard (45MB). The Lunenfeld-Tanenbaum Research Institute. At Mount Sinai Hospital. All associated with the.

3

Jobs - Bader Lab @ The University of Toronto

http://www.baderlab.org/Jobs

Last updated at 2011-03-16 16:30:52. Potential graduate students (e.g. students looking for a rotation) who have already been accepted to the departments of Medical Genetics. Are encouraged to contact Gary Bader. By e-mail about positions. Please familiarize yourself with this website and express your research interests in your e-mail. Experience or strong interest in biology and computer science is expected. Computer programming ability is required e.g. Perl, Java. Are encouraged to contact Gary Bader.

4

Publications - Bader Lab @ The University of Toronto

http://www.baderlab.org/Publications

Last updated at 2016-07-20 12:56:39. See who's cited our work at Google Scholar. Ectopic miR-125a Expression Induces Long-Term Repopulating Stem Cell Capacity in Mouse and Human Hematopoietic Progenitors. Wojtowicz EE, Lechman ER, Hermans KG, Schoof EM, Wienholds E, Isserlin R. Van Veelen PA, Broekhuis MJ, Janssen GM, Trotman-Grant A, Dobson SM, Krivdova G, Elzinga J, Kennedy J, Gan OI, Sinha A, Ignatchenko V, Kislinger T, Dethmers-Ausema B, Weersing E, Alemdehy MF, de Looper HW, Bader GD. Rentas S, Holz...

5

Community - Bader Lab @ The University of Toronto

http://www.baderlab.org/Community

Last updated at 2013-07-02 13:47:07. This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at http:/ www.compbio.utoronto.ca/. Which has more up to date information than this site. An up to date list of computational biology relevant seminars in Toronto is maintained at http:/ compbio.cs.toronto.edu/cbl/events.htm. In a Google Calendar). University of Toronto Web Notice System. Maintains seminars for a few departments. A list of conferences.

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pathwaycommons.org pathwaycommons.org

cPath2::Datasources (Pathway Commons)

http://www.pathwaycommons.org/pc2/datasources.html

Pathway Commons Web Service v8. Data (canonical molecules, ontologies) are converted to BioPAX utility classes, such as. EntityReference, ControlledVocabulary, EntityFeature. Sub-classes, and saved as the initial BioPAX model, which forms the foundation for integrating pathway data and for id-mapping. And binary interaction data (interactions, participants) are normalized next and merged into the database. Original reference molecules are replaced with the corresponding BioPAX warehouse objects.

pathwaycommons.org pathwaycommons.org

cPath2::Info (Pathway Commons)

http://www.pathwaycommons.org/pc2

Pathway Commons Web Service v8. To query the integrated biological pathway database, application developers can use the following commands:. Please check the availability terms of contributing databases. There are a number of "undocumented" URLs (subject to change without notice) providing metadata, files, scripts and images for creating and maintaining this website. Nevertheless, advanced users may find the following examples useful:. Fore more information, please contact us. About URIs and IDs. URLs (f...

pathwaycommons.org pathwaycommons.org

cPath2::Downloads (Pathway Commons)

http://www.pathwaycommons.org/pc2/downloads

Pathway Commons Web Service v8. Current and old version pathway data archives in BioPAX, SIF and GMT formats. And more, can be downloaded from here. What you find there. Data archives there have names like. PathwayCommons.8. source . FORMAT . ext .gz. Where source is either identifier (part of the provenance URI) or 'All' (all the data merged), or 'Detailed' (pathway data only; PSI-MI data were removed), or 'Warehouse' (only entity reference objects, xrefs, vocabularies; no pathways/interactions).

compbio.cs.toronto.edu compbio.cs.toronto.edu

Core Faculty @ Computational Biology Lab - U of T

http://compbio.cs.toronto.edu/cbl/corefaculty.htm

Http:/ www.baderlab.org/. Biomolecular interaction networks and pathways, molecular profiles. Gary works on biological network analysis and pathway information resources. He is involved in the development of the Cytoscape platform for network visualization and analysis, and also developed the Biomolecular Interaction Network Database (BIND). Http:/ www.cs.utoronto.ca/ brudno. Comparative genomics, genome variation, algorithms, sequence assembly, population genetics. Brendan and his group group develop ne...

compsysbio.org compsysbio.org

SubSeqer

http://www.compsysbio.org/subseqer

SubSeqer is simple to use, and can be completed in four steps illustrated in the graphic below: sequence submission; preliminary analysis and parameter refinement; network visualizaion; and motif extension using sequence logos. For more information on how to use SubSeqer, please see the Documentation. Step 1: Sequence Insertion and Parameter Selection. Sequence (in FASTA format):. Let SubSeqer help me determine parameters (recommended). Let me input my own parameters. Percentile Odds Score Cutoff:.

tdccbr.med.utoronto.ca tdccbr.med.utoronto.ca

Faculty Members | Donnelly Centre for Cellular and Biomolecular Research

http://tdccbr.med.utoronto.ca/faculty/directors_welcome.html

Skip to main content. U of T Main. Friesen, D. James (Emeritus Faculty). Roth, Frederick (Fritz). Van der Kooy, Derek. Centre for Commercialization of Regenerative Medicine. Centre for Commercialization of Antibodies and Biologics. Toronto Recombinant Antibody Centre. Donnelly-Princess Margaret Screening Centre. Cecil Yip Doctoral Research Award. Jennifer Dorrington Graduate Research Award. Donnelly Centre Research Thesis Prize. Donnelly Centre Graduate Student Association. Charles H. Best Fellows. Funct...

download.baderlab.org download.baderlab.org

Signalling Domain Explorer

http://download.baderlab.org/PDZ

Signalling Domain Explorer Home. Use this tool to retrieve protein domain sequence data from Ensembl. The domains are predicted by the following protein predictors: Pfam, SMART, Superfamily, pfscan, and scanprosite. Click on a domain of interest. Domains and Interpro IDs can be sorted alphabetically and numerically by clicking on the column headers.

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BADER ÇATI ÇÖZÜMLERİ : EKONOMİK,ESTETİK ve EMNİYETLİ ÇATILAR. Fabrikamız, AYDIN'da ASTİM Organize Sanayi Bölgesi'nde 2013 yılı itibariyle son teknoloji makinaları ile faaliyete geçmiş olup, bölgenin tamamına hizmet edebilecek üretim kapasitesine sahiptir. BADER Çatı Çözümleri, Classic ve Venedik Serisi olmak üzere iki ayrı model ile üretime başlamıştır. Bu sayede müşterilerine farklı model ve renklerde ürün çeşitliliği sağlamıştır. Bader Çatı Çözümleri 2013.

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Home - Bader Lab @ The University of Toronto

Revert to this revision. Predicting biologically relevant protein interactions and cellular network evolution. Detection of cell type and stage active biological processes using molecular profiles. Multiple perturbation analysis to map cellular systems. Biological pathway and network databases and analysis tools. More about our research. Or view our research interests as art. Watch the Inner Life of the Cell movie from Harvard (45MB). The Lunenfeld-Tanenbaum Research Institute. At Mount Sinai Hospital.

baderlab.net baderlab.net

Home - Bader Lab @ The University of Toronto

Revert to this revision. Predicting biologically relevant protein interactions and cellular network evolution. Detection of cell type and stage active biological processes using molecular profiles. Multiple perturbation analysis to map cellular systems. Biological pathway and network databases and analysis tools. More about our research. Or view our research interests as art. Watch the Inner Life of the Cell movie from Harvard (45MB). The Lunenfeld-Tanenbaum Research Institute. At Mount Sinai Hospital.

baderlab.org baderlab.org

Home - Bader Lab @ The University of Toronto

Predicting biologically relevant protein interactions and cellular network evolution. Detection of cell type and stage active biological processes using molecular profiles. Multiple perturbation analysis to map cellular systems. Biological pathway and network databases and analysis tools. More about our research. Or view our research interests as art. Watch the Inner Life of the Cell movie from Harvard (45MB). The Lunenfeld-Tanenbaum Research Institute. At Mount Sinai Hospital. All associated with the.

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