bagel.molgenrug.nl
Bagel automated bacteriocin miningBagel - lantibiotic and bacteriocin minin tools and database.
http://bagel.molgenrug.nl/
Bagel - lantibiotic and bacteriocin minin tools and database.
http://bagel.molgenrug.nl/
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Bagel automated bacteriocin mining | bagel.molgenrug.nl Reviews
https://bagel.molgenrug.nl
Bagel - lantibiotic and bacteriocin minin tools and database.
bagel.molgenrug.nl
Weblinks
http://bagel.molgenrug.nl/index.php/web-links
Skip to main navigation. Skip to first column. Skip to second column. Web sites, software and systems used by BAGEL. Publication of BAGEL (2006). Publication of BAGEL2 (2010). Resource for genome sequences. Mirror of the NCBI genome database. PFAM hmm models database. TIGRFAM hmm models database. Universel reference database for annotation proteins. Database system used by BAGEL. Linux platform on which BAGEL runs. Web interface for BAGEL. Last Updated on Thursday, 07 February 2013 16:42.
Submit a Bacteriocin
http://bagel.molgenrug.nl/index.php/submit-a-bacteriocin
Skip to main navigation. Skip to first column. Skip to second column. Suggest a new class / rule. Is Free Software released under the GNU/GPL License.
BLAST
http://bagel.molgenrug.nl/index.php/bacteriocin-blast
Skip to main navigation. Skip to first column. Skip to second column. Example file of a protein FastA file: proteins.faa. Upload sequences in FastA format:. Paste your sequence(s) in FastA format in the text box below:. Maximum number of hits per sequence:. Default=1 ; returns only the best hit]. By default the output will be presented as a table, here you can choose for other output formats:. Tabular with comment lines. BLAST archive format (ASN.1). Suggest a new class / rule.
Manual
http://bagel.molgenrug.nl/index.php/manual
Skip to main navigation. Skip to first column. Skip to second column. BAGEL3 is very simple to use. The user can either select a genome present on the server from a dropdown menu or can upload a file from his computer. The required input is a folder or a file containing one or multiple DNA files in a FastA format. Also FastA files containing multiple DNA entries are allowed. If it is a folder it should be compressed into a zip rar or tar file. Last Updated on Wednesday, 16 January 2013 14:45.
BAGEL3
http://bagel.molgenrug.nl/index.php/bagel3
Skip to main navigation. Skip to first column. Skip to second column. This section allows to mine for bacteriocins in single or multiple DNA sequences such as (un)finished genomes, scaffold files but also meta-genomics data. The required input is a folder containing one or multiple DNA files in a FastA format. Also FastA files containing multiple DNA entries are allowed. No additional information is needed. ORF calling and annotation will be done by BAGEL. From the dropdown menu. File or as a zip. Acetob...
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People
http://www.molgenrug.nl/index.php/people
Today Aug 30 2016 Molgen has 66 groupmembers. Marielle van den Esker. Sjoerd van der Meulen. ProfDr. Oscar Kuipers. Genome and transcriptome analyses of G -bacteria, specificially L.Lactis, B.subtilis and S.pneumoniae. ProfDr. Jan Kok. Molecular genetic and genomic analyses of the Gram-positive bacteria Lactococcus lactis. ProfDr. Jan Willem Veening. ProfDr. Gert Moll. Honorary professor Protein Modification and Functionality. Dr Angel Alegria Gonzalez. Competence in Strep.pneumoniae. Dr Anne de Jong.
Articles
http://www.molgenrug.nl/index.php/articles
Time series B.sub. A mobile genetic element profoundly increases heat resistance of bacterial spores. Berendsen EM; Boekhorst J; Kuipers OP; Wells-Bennik MH. ISME J 2016 ;0(0):0-0. No pdf for mg0892. Draft Genome Sequences of 10 Bacillus subtilis Strains That Form Spores with High or Low Heat Resistance. Berendsen EM; Wells-Bennik MH; Krawczyk AO; de Jong A; van Heel A; Eijlander RT; Kuipers OP. Genome Announc 2016 ;4(2):0-0. No pdf for mg0895. Genome Announc 2016 ;4(3):0-0. No pdf for mg0889. No pdf for...
MolGen News
http://www.molgenrug.nl/index.php/molgen-news
Thesis defence Auke van Heel. PhD ceremony: Auke van Heel. 14:30 uur, Academiegebouw, Broerstraat 5, Groningen. Dissertation: Prediction, production and characterization of post-translationally modified antimicrobial peptide. Promotor: prof.dr. O.P.Kuipers. Faculty: Mathematics and Natural Sciences. Thesis defence Liang Zhou. PhD ceremony: Liang Zhou. 14:30 uur, Academiegebouw, Broerstraat 5, Groningen. Dissertation: Bioengineering of the lantibiotic nisin to create new antimicrobial functionalities.
CampSign
http://www.campsign.bicnirrh.res.in/links.php
Databases and Prediction algorithms. Http:/ tcoffee.crg.cat/apps/ampa/do. Http:/ marray.cmdr.ubc.ca/cgi-bin/amp.pl. Http:/ www.imtech.res.in/raghava/antibp2/. Http:/ aps.unmc.edu/AP/main.php. Http:/ crdd.osdd.net/servers/avpdb. Http:/ crdd.osdd.net/servers/avppred/. Http:/ www.baamps.it/. Http:/ bactibase.pfba-lab-tun.org. Http:/ bagel.molgenrug.nl/. Http:/ www.camp3.bicnirrh.res.in/. Http:/ bioserver-2.bioacademy.gr/Bioserver/C-PAmP/. Http:/ split4.pmfst.hr/dadp/. Http:/ milkampdb.org/home.php.
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Bagel automated bacteriocin mining
Skip to main navigation. Skip to first column. Skip to second column. Bagel automated bacteriocin mining. Currently we support two versions of BAGEL:. BAGEL3 is the recommended version and use single or multiple DNA sequences but also (un)fiinished genomes and scaffold data as input for bacteriocin mining. BAGEL2 uses genbank files as input. Click here to Start mining for bacteriocins. Suggest a new class / rule. Home Page Molecular genetics. We have 1 guest online.
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