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Blue Collar Bioinformatics(by Brad Chapman)
http://www.bcb.io/
(by Brad Chapman)
http://www.bcb.io/
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Blue Collar Bioinformatics | bcb.io Reviews
https://bcb.io
(by Brad Chapman)
bcb.io
Updated comparison of variant detection methods: Ensemble, FreeBayes and minimal BAM preparation pipelines – Blue Collar Bioinformatics
http://bcb.io/2013/10/21/updated-comparison-of-variant-detection-methods-ensemble-freebayes-and-minimal-bam-preparation-pipelines
Community built tools for biological data analysis. Updated comparison of variant detection methods: Ensemble, FreeBayes and minimal BAM preparation pipelines. October 21, 2013. I previously discussed our approach for evaluating variant detection methods. Using a highly confident set of reference calls. Provided by NIST's Genome in a Bottle consortium. For the NA12878 human HapMap genome. In this post, I'll update those conclusions based on recent improvements in GATK and FreeBayes. Post-alignment BAM pr...
Validating multiple cancer variant callers and prioritization in tumor-only samples – Blue Collar Bioinformatics
http://bcb.io/2015/03/05/cancerval
Community built tools for biological data analysis. Validating multiple cancer variant callers and prioritization in tumor-only samples. March 05, 2015. The post discusses work validating multiple cancer variant callers in bcbio-nextgen. Using a synthetic reference call set from the ICGC-TCGA DREAM challenge. We've previously validated germline variant calling methods. Publicly available whole genome truth sets like the NA12878 Genome in a Bottle reference materials. Provides a set of synthetic datasets.
Validated whole genome structural variation detection using multiple callers – Blue Collar Bioinformatics
http://bcb.io/2014/08/12/validated-whole-genome-structural-variation-detection-using-multiple-callers
Community built tools for biological data analysis. Validated whole genome structural variation detection using multiple callers. August 12, 2014. Structural variant detection goals. This post describes community based work integrating structural variant calling and validation into bcbio-nextgen. I've previously written about approaches for validating single nucleotide changes (SNPs) and small insertions/deletions (Indels). X2013; a probabilistic structural variant caller. Developed by Tobias Rausch.
Validating generalized incremental joint variant calling with GATK HaplotypeCaller, FreeBayes, Platypus and samtools – Blue Collar Bioinformatics
http://bcb.io/2014/10/07/joint-calling
Community built tools for biological data analysis. Validating generalized incremental joint variant calling with GATK HaplotypeCaller, FreeBayes, Platypus and samtools. October 07, 2014. Incremental joint variant calling. There are two issues with trying to provide complete combined call sets. First, it is computationally expensive to call a large number of samples simultaneously. Second, adding any new samples to a callset requires repeating this expensive computation. This N 1 problem. Output for each...
Benchmarking variation and RNA-seq analyses on Amazon Web Services with Docker – Blue Collar Bioinformatics
http://bcb.io/2014/12/19/awsbench
Community built tools for biological data analysis. Benchmarking variation and RNA-seq analyses on Amazon Web Services with Docker. December 19, 2014. We developed a freely available, easy to run implementation of bcbio-nextgen. On Amazon Web Services (AWS). The entire installation bootstraps from standard Linux AMIs, enabling adjustment of the tools, genome data and installation without needing to prepare custom AMIs. The implementation uses Elasticluster. Isolates code and tools inside a Docker. With 1...
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dennogumi.org
https://www.dennogumi.org/page/2
Linux · kde. Danbooru Client 0.5.0 released. A new version of Danbooru Client is now available! Tip: opening and closing ports needed by a systemd service. Recently I’ve been testing out murmur, http:/ wiki.mumble.info/wiki/Main Page. Server component, on my CentOS 7 server. Murmur requires specific ports being open to operate, and when using it I would open them manually, and close them after the session had been completed. General · linux · kde. The Big Forum Cleaning. Danbooru Client 0.4.0. Content li...
DataMatrix
https://www.dennogumi.org/projects/datamatrix
This project has been discontinued. You may want to look at Pandas. I have a problem. Danbooru Client 0.6.0 released. Of gases, Qt, and Wayland. Where are my noble gases? I need MORE noble gases! The ST.E.A.L. Saga. Dennogumi.org is a collection of blog posts on science, anime, and Free Software. More. Melissa Adkins - graphic designer. Content licensed under a CC BY-NC-SA 4.0.
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Book Cover Bakery
Hi, I'm Hanna Sandvig. I make custom covers for publishers and indie authors. No pre-made covers, no stock images, just beautiful illustrations and premium typography to make your book come to life. Because, doesn't your unique story deserve to find the readers who will truly love it? 2017 Book Cover Bakery. Theme by Theme Trust.
BCB computer
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Bioinformatics & Computational Biology
Skip to main content. ISU Quick Links Menu. Bioinformatics and Computational Biology. Adina Howe researches harmful algal blooms. January 20, 2018. BCB Students to participate in Girls In Science event. January 17, 2018. Rothschild named a Fellow by the National Academy of Inventors. December 14, 2017. Carriquiry honored by Technology Association of Iowa. November 16, 2017. Funeral service for Pete Reilly, BCB faculty member. November 9, 2017. Visit the Iowa State University Digital Repository.
bcb.ie
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Blue Collar Bioinformatics
Validating multiple cancer variant callers and prioritization in tumor-only samples. Leave a comment ». The post discusses work validating multiple cancer variant callers in bcbio-nextgen. Using a synthetic reference call set from the ICGC-TCGA DREAM challenge. We’ve previously validated germline variant calling methods. Publicly available whole genome truth sets like the NA12878 Genome in a Bottle reference materials. Provides a set of synthetic datasets. That they used to compare multiple callers.
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よりよいコミュニケーションのために – たくさんの実習を通して学ぶ「使える」コミュニケーションスキル
受付時間 9 30 17 30 土 日 祝日除く. この度 Breaking The Communication Barrier よりよいコミュニケーションのために サイトをリニューアルいたしました。 オン 2018年3月31日 11:00 AM. オン 2018年4月7日 11:00 AM. オン 2018年4月8日 10:00 AM. オン 2018年4月22日 10:00 AM. オン 2018年5月26日 10:00 AM.
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Bloomsbury Centre for Bioinformatics: HOME
The Bloomsbury Centre for Bioinformatics. The Bloomsbury Centre for Bioinformatics. Director: Professor David Jones. The Bloomsbury Centre for Bioinformatics. Is a collaborative venture between UCL and Birkbeck College. The research groups affiliated with the Centre span disciplines such as protein structure prediction and classification, genomic and transcriptomic data analysis, statistical genetics and systems biology. The BCB is also affiliated with the Institute of Structural Molecular Biology. The B...
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