beta.pseudomonas.com

The Pseudomonas Genome Database - Genome annotation and comparative genome analysis

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). The Pseudomonas Genome Database collaborates with an international panel of expert. Search Annotations by Name. Choose a specific strain (optional). July 31, 2015.

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The Pseudomonas Genome Database - Genome annotation and comparative genome analysis | beta.pseudomonas.com Reviews

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Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). The Pseudomonas Genome Database collaborates with an international panel of expert. Search Annotations by Name. Choose a specific strain (optional). July 31, 2015.

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1 pseudomonas

2 genome db

3 search specific species

4 advanced search

5 blast search

6 downloads

7 news

8 gene/product name

9 return

10 exact matches

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The Pseudomonas Genome Database - Genome annotation and comparative genome analysis | beta.pseudomonas.com Reviews

https://beta.pseudomonas.com

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). The Pseudomonas Genome Database collaborates with an international panel of expert. Search Annotations by Name. Choose a specific strain (optional). July 31, 2015.

INTERNAL PAGES

beta.pseudomonas.com

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Subcellular localization Pseudomonas aeruginosa PAO1 (Reference)

http://beta.pseudomonas.com/localizations/list

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). Pseudomonas aeruginosa PAO1 (Reference). The type of evidence supporting the localization is given by the 'Confidence' classification:. 20 results per page. Chromosoma...

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Pseudomonas Genome Database

http://beta.pseudomonas.com/browse/annotations

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). Browse gene annotations by category. Browse the log of all annotations updates based on manual curation, primarily those involving the P. aeruginosa PAO1 genome. Prote...

3

Blast Search

http://beta.pseudomonas.com/blast/set

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). Query a nucleotide or protein sequence against a database of nucleotide or protein sequences. Note 1: BlastP and BlastX searches. 1) Select a Blast program. Winsor GL,...

4

COGs assigned to Pseudomonas aeruginosa PAO1 (Reference)

http://beta.pseudomonas.com/cog/list

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). Pseudomonas aeruginosa PAO1 (Reference). This list is currently comprised of COG mappings for. PAO1 based on the 2014 analysis available at NCBI's COG database. Ammoni...

5

Functional Domain Annotations

http://beta.pseudomonas.com/interpro/list

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). Pseudomonas aeruginosa PAO1 (Reference). This is a list of. Functional domain predictions made using the InterProScan. 20 results per page. 50 results per page. Signal...

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v2.pseudomonas.com

Pseudomonas Genome Database: A database for Pseudomonas aeruginosa and other Pseudomonas species genomes

http://v2.pseudomonas.com/index.jsp

Please note that we will be retiring this old site on Tuesday, August 25th, 2015. At that point, the URL for www.pseudomonas.com will bring you to our new site currently hosted at beta.pseudomonas.com. We encourage you to visit the new site now and see a more recent set of updated gene annotations and MANY more. Strain-Specific Summaries and Analyses. Choose from Complete Genomes. Pseudomonas aeruginosa NCGM2.S1. Pseudomonas aeruginosa PAO1 PAO1-UW. Pseudomonas denitrificans ATCC 13867. Since 2001, the P...

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beta.pseudomonas.com

The Pseudomonas Genome Database - Genome annotation and comparative genome analysis

Current Strain ( Clear/Search All. Search for DNA motifs. Functional Domain Mappings (InterPro). Gene Ontology (GO) Term Annotations. Proteins With Human Homologs. Proteins With Known 3D Structures. Strains in this Database. NCBI Genome/Transcriptome Project Summaries. NCBI Gene Expression Datasets (GEO). Genome Browser (GBrowse, JBrowse). The Pseudomonas Genome Database collaborates with an international panel of expert. Search Annotations by Name. Choose a specific strain (optional). July 31, 2015.

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