bindup.technion.ac.il

BindUP - Predicting DNA and RNA binding proteins using electrostatic patches

Enter a PDB ID:. Upload a coordinate file in PDB format:. Calculate all protein chains (each chain is calculated separately). Select a protein chain identifier:. Number of patches (of each type) to display:. Send a link to the results by E-mail. E-mail address:. For fast and proper display of the results, it is recommended to use Google Chrome, Safari or Firefox browsers. Internet Explorer is not recommended. Paste your list of PDB IDs here:. Or, upload a file:. Enter a name for the current job:.

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BindUP - Predicting DNA and RNA binding proteins using electrostatic patches | bindup.technion.ac.il Reviews

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Enter a PDB ID:. Upload a coordinate file in PDB format:. Calculate all protein chains (each chain is calculated separately). Select a protein chain identifier:. Number of patches (of each type) to display:. Send a link to the results by E-mail. E-mail address:. For fast and proper display of the results, it is recommended to use Google Chrome, Safari or Firefox browsers. Internet Explorer is not recommended. Paste your list of PDB IDs here:. Or, upload a file:. Enter a name for the current job:.

<META> KEYWORDS

1 overview

2 manual

3 version 1 0

4 single protein mode

5 batch mode

6 input

7 calculation options

8 chain selection

9 patches calculation

10 calculate positive patches

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overview,manual,version 1 0,single protein mode,batch mode,input,calculation options,chain selection,patches calculation,calculate positive patches,calculate negative patches,general options,note,general options optional

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BindUP - Predicting DNA and RNA binding proteins using electrostatic patches | bindup.technion.ac.il Reviews

https://bindup.technion.ac.il

Enter a PDB ID:. Upload a coordinate file in PDB format:. Calculate all protein chains (each chain is calculated separately). Select a protein chain identifier:. Number of patches (of each type) to display:. Send a link to the results by E-mail. E-mail address:. For fast and proper display of the results, it is recommended to use Google Chrome, Safari or Firefox browsers. Internet Explorer is not recommended. Paste your list of PDB IDs here:. Or, upload a file:. Enter a name for the current job:.

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bindup.technion.ac.il

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BindUP - Predicting DNA and RNA binding proteins using electrostatic patches

http://bindup.technion.ac.il/index.html

Enter a PDB ID:. Upload a coordinate file in PDB format:. Calculate all protein chains (each chain is calculated separately). Select a protein chain identifier:. Number of patches (of each type) to display:. Send a link to the results by E-mail. E-mail address:. For fast and proper display of the results, it is recommended to use Google Chrome, Safari or Firefox browsers. Internet Explorer is not recommended. Paste your list of PDB IDs here:. Or, upload a file:. Enter a name for the current job:.

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BindUP - Predicting DNA and RNA binding proteins using electrostatic patches

http://bindup.technion.ac.il/overview.html

BindUP holds information for all the protein structures in the RCSB PDB database. And is updated every month. The server is applicable in either single or batch mode and can be applied for testing hundreds of proteins simultaneously in a highly efficient manner. The Patch Finder algorithm. The Patch Finder algorithm automatically assigns surface positive/negative patches by looking for adjacent points on the protein surface that meet a given electrostatic potential cutoff (2 or -2 kT/e). The algorithm fo...

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BindUP - Predicting DNA and RNA binding proteins using electrostatic patches

http://bindup.technion.ac.il/manual.html

Text files for download. In this mode, BindUP calculates a specific chain or all the protein chains of one protein structure. The results include the Na-binding prediction of each calculated chain and the requested electrostatic patches visualized by Jmol. BindUP requires a coordinate file in PDB format. The input can be given in one of two ways:. Supply a valid PDB ID. A four alphanumeric characters identifier, taken from RCSB PDB. Upload a user-defined coordinate file. By default, BindUP displays the l...

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vls3d.com

Vls3d - Binding pockets & ligand-pocket datasets

http://www.vls3d.com/links/bioinformatics/binding-pockets

Doctoral school for therapeutic Innovation. Computational Biology and Chemistry. Protein, DNA, RNA, Glycan modeling. Protein-protein docking, template-based docking. Hotspots, Interace residues, PPI modulators. PPI databases, network. Binding pockets and ligand-pocket datasets. Peptides, antibodies, epitopes. Visualization - commercial tools. Chemistry toolkits and utilities. Manage collections - chemical space. ADMET- physchem predictions - related tools. Off-targets, drug repurposing. Identifying Drugg...

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Patch Finder Plus

http://pfp.technion.ac.il/index.html

A new and upgraded server is available: BindUP. Including all PatchFinderPlus features and many more. We highly recommend using it instead of PatchFinderPlus. Enter a PDB ID:. Or, upload a PDB file:. Calculate all protein chains (each chain is calculated separately). Or, select a protein chain identifier:. Send a link to the results by E-mail. E-mail address:. Note: the electrostatic patches on the protein are visualized using Jmol viewer. To download the latest version of Java.

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bindup.technion.ac.il

BindUP - Predicting DNA and RNA binding proteins using electrostatic patches

Enter a PDB ID:. Upload a coordinate file in PDB format:. Calculate all protein chains (each chain is calculated separately). Select a protein chain identifier:. Number of patches (of each type) to display:. Send a link to the results by E-mail. E-mail address:. For fast and proper display of the results, it is recommended to use Google Chrome, Safari or Firefox browsers. Internet Explorer is not recommended. Paste your list of PDB IDs here:. Or, upload a file:. Enter a name for the current job:.

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