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IMOD, PEET, and SerialEM from the Mastronarde Group

IMOD, PEET, and SerialEM from the Mastronarde Group. University of Colorado, Boulder. This site hosts software distributed by the Mastronarde group. See our Home Page. IMOD is a group of programs for 3D reconstruction, and modeling, and analysis. PEET performs alignment, averaging and classification of 3D subvolumes. SerialEM is software package for data acquisition from electron microscopes. Shape interfaces with IMOD to automate segmentation of membrane.

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IMOD, PEET, and SerialEM from the Mastronarde Group | bio3d.colorado.edu Reviews

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IMOD, PEET, and SerialEM from the Mastronarde Group. University of Colorado, Boulder. This site hosts software distributed by the Mastronarde group. See our Home Page. IMOD is a group of programs for 3D reconstruction, and modeling, and analysis. PEET performs alignment, averaging and classification of 3D subvolumes. SerialEM is software package for data acquisition from electron microscopes. Shape interfaces with IMOD to automate segmentation of membrane.

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IMOD, PEET, and SerialEM from the Mastronarde Group | bio3d.colorado.edu Reviews

https://bio3d.colorado.edu

IMOD, PEET, and SerialEM from the Mastronarde Group. University of Colorado, Boulder. This site hosts software distributed by the Mastronarde group. See our Home Page. IMOD is a group of programs for 3D reconstruction, and modeling, and analysis. PEET performs alignment, averaging and classification of 3D subvolumes. SerialEM is software package for data acquisition from electron microscopes. Shape interfaces with IMOD to automate segmentation of membrane.

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bio3d.colorado.edu

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Index of /ftp/Shape

http://bio3d.colorado.edu/ftp/Shape

2014-08-01 17:27 1.1K. 2014-08-01 17:24 3.2M.

2

PEET Downloads

http://bio3d.colorado.edu/ftp/PEET

2015-11-09 10:30 7.8K.

3

The IMOD Home Page

http://bio3d.colorado.edu/imod

The IMOD Home Page. IMOD Survey Is Now Underway. Please take the IMOD survey. So that we can better understand how you use IMOD and what developments you need for the future. IMOD 4.7 Is Now Available for Linux, Windows, and Mac OS X. DOWNLOAD IMOD 4.7. Download Alpha or Beta Development Versions (IMOD 4.8.x). Hardware and Operating System Requirements. IMOD Guides, Assistance and Information. IMOD Discussion and Mailing Lists (subscribing and unsubscribing). SerialEM Tilt Series Acquisition Software.

4

IMOD Download

http://bio3d.colorado.edu/imod/download.html

IMOD is free. We do however request a few things from you to help with the IMOD development. With us and help us continue work on this project. The information you give will only be used to help us continue to get funding. The IMOD mailing list to get notifications about new releases and trainings, or the IMOD discussion list, where many questions are raised and answered. These lists also help us keep track of the interest in IMOD. Latest Stable Release Packages for: Linux. Java for Running eTomo. If you...

5

SerialEM Program and Framework Downloads

http://bio3d.colorado.edu/ftp/SerialEM

SerialEM Program and Framework Downloads. 2015-12-09 21:18 1.7K. HIGHLIGHTS.3.5.txt. 2015-10-13 10:25 1.4K. 2015-10-13 10:24 8.2K. 2015-12-15 09:52 5.6K. 2013-08-23 12:53 4.1M Windows executable file. SerialEM 3-5-5 32.exe. 2016-05-23 10:33 4.3M Windows executable file. SerialEM 3-5-5 64.exe. 2016-05-17 17:07 4.4M Windows executable file. SerialEM 3-5-5 nohang.exe. 2016-05-23 10:33 4.3M Windows executable file. SerialEM 3-5-6 32.exe. 2016-07-19 17:04 4.3M Windows executable file. SerialEM 3-5-6 64.exe.

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Synechocystis sp. PCC 6803 - Other Resources

http://synechocystis.asu.edu/other_resources.htm

More information can be obtained from the following websites:. Http:/ bio3d.colorado.edu. Http:/ photoscience.la.asu.edu/photosyn. Http:/ www-ncmir.ucsd.edu/doc/tomo/. Http:/ www.kazusa.or.jp/cyanobase/Synechocystis/. Http:/ www-is.biotoul.fr/is/synechocystis/tabgenome.html. For any queries, contact webmaster. Website developed by: Naresh Kumar Contact Developer.

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3DEM Home Page

http://3dem.ucsd.edu/labs_a_c.shtm

The Boulder Laboratory for 3-Dimensional Electron Microscopy of Cells. Boulder, Colorado, USA. WM Keck Institute for Cellular Visualization, Waltham, MA, USA. Centre for Biomolecular Electron Microscopy. Imperial College, London, England. Centre for Microscopy and Microanalysis. The University of Queensland, Brisbane, Australia. University of California at Davis, USA. The Hospital for Sick Children and The University of Toronto, Canada. Cryo-electron microscopy at McMaster University.

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INMS - Outside Links

http://www.indianamicroscopysociety.org/links.html

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Home

http://johannahoog.com/index.html

Johanna Höög - structural cell biologist. HOW TO GROW A FLAGELLUM. One of my favourite things to do is to describe a dynamic event inside cells by reconstructing 3D snapshots of that event, frozen in time. When many snapshots are added together, a previsouly unkown mechanism can be revealed. This is a bit like flicking through a book of images to create a cartoon, but here we study tiny events in real cells. Cartoon of three cells with flagella. Middle) and human spermatozoa (right). And a green algea (.

nanomorphomics.net

NanoMorphomics

http://www.nanomorphomics.net/infobase_links.aspx

School of Medicine St Andrews. British Society for Cell Biology. International Society for Stereology. How much and how many in cells. Life Sciences Mobility Portal. University of St Andrews.

catarinagadelha.com

Catarina Gadelha webpages

http://www.catarinagadelha.com/links.shtml

Some useful online resources. Plenty of protocols, meeting information, resources etc. List of links to other trypanosome research labs, and more. Trypanosome vectors, tools, and other stuff. The WHO Special Programme for Research and Training in Tropical Diseases. Kinetoplastid genome resources that include integration of functional data. Part of the EuPathDB. Curated pathogen genome resourses from the Wellcome Trust Sanger Centre. At the Wellcome Trust Sanger Centre. At the Wellcome Trust Sanger Centre.

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IMOD, PEET, and SerialEM from the Mastronarde Group

IMOD, PEET, and SerialEM from the Mastronarde Group. University of Colorado, Boulder. This site hosts software distributed by the Mastronarde group. See our Home Page. IMOD is a group of programs for 3D reconstruction, and modeling, and analysis. PEET performs alignment, averaging and classification of 3D subvolumes. SerialEM is software package for data acquisition from electron microscopes. Shape interfaces with IMOD to automate segmentation of membrane.

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