bioinf.comav.upv.es

Bioinformatics & genomics — Bioinformatics at COMAV 0.1 documentation

The COMAV institute is devoted to the preservation of the horticultural plant variability and to the plant breeding on horticultural species. To accomplish these goals we have developed some software that it might be of some use to other researchers like ngs backbone or sff extract. We also provide analysis and technical support to other molecular genetic researchers. Our main research interests are:. Genomic and transcriptomic analysis. Development of genetic markers. Analysis of NGS sequences.

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Bioinformatics & genomics — Bioinformatics at COMAV 0.1 documentation | bioinf.comav.upv.es Reviews

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The COMAV institute is devoted to the preservation of the horticultural plant variability and to the plant breeding on horticultural species. To accomplish these goals we have developed some software that it might be of some use to other researchers like ngs backbone or sff extract. We also provide analysis and technical support to other molecular genetic researchers. Our main research interests are:. Genomic and transcriptomic analysis. Development of genetic markers. Analysis of NGS sequences.

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2 bioinformatics and genomics

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5 publications

6 getting here

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Bioinformatics & genomics — Bioinformatics at COMAV 0.1 documentation | bioinf.comav.upv.es Reviews

https://bioinf.comav.upv.es

The COMAV institute is devoted to the preservation of the horticultural plant variability and to the plant breeding on horticultural species. To accomplish these goals we have developed some software that it might be of some use to other researchers like ngs backbone or sff extract. We also provide analysis and technical support to other molecular genetic researchers. Our main research interests are:. Genomic and transcriptomic analysis. Development of genetic markers. Analysis of NGS sequences.

INTERNAL PAGES

bioinf.comav.upv.es

1

Courses — Bioinformatics at COMAV 0.1 documentation

https://bioinf.comav.upv.es/courses.html

Linux y Python para las ciencias de la vida. Linux para las ciencias de la vida. 1 ed Linux para las ciencias de la vida:. Del 03/10/2016 al 05/10/2016. Mail us if your are interested in these courses and we will inform once the registration is about to open. If you are interested in organize these courses in your organization, please contact us. Is licensed under a Creative Commons Reconocimiento 4.0 Internacional License.

2

NGS sequence analysis — Bioinformatics at COMAV 0.1 documentation

https://bioinf.comav.upv.es/courses/sequence_analysis/index.html

NGS sequence file formats. SNP calling and filtering. Dealing with big result files. Maize SNP calling practice. The course deals with the analysis from NGS reads from the 454, Solid and Illumina sequencers. The main topics are:. Read quality control,. Despite that a small introduction to unix console usage is included in this course, could be interesting to the students to practice with the basic orders before to assist to the course. There are several interesting courses on line, such as:. The Michigan...

3

Bioinformatics & genomics — Bioinformatics at COMAV 0.1 documentation

https://bioinf.comav.upv.es/index.html

The COMAV institute is devoted to the preservation of the horticultural plant variability and to the plant breeding on horticultural species. To accomplish these goals we have developed some software that it might be of some use to other researchers like ngs backbone or sff extract. We also provide analysis and technical support to other molecular genetic researchers. Our main research interests are:. Genomic and transcriptomic analysis. Development of genetic markers. Analysis of NGS sequences.

4

Informática para las ciencias de la vida: Unix y Python — Bioinformatics at COMAV 0.1 documentation

https://bioinf.comav.upv.es/courses/linux/index.html

La Shell the UNIX. El sistema de ficheros. Procesamiento de ficheros de texto. Informática para las ciencias de la vida: Unix y Python. Sobre la elección de las herramientas. Navegando por el sistema de ficheros. La Shell the UNIX. El sistema de ficheros. Nombres de directorios y archivos. El directorio de trabajo. Rutas relativas y absolutas. Moviendo, renombrando y copiando ficheros. Obteniendo información sobre el sistema de archivos. Completado automático e historia. Donde están los ejecutables?

5

Publications — Bioinformatics at COMAV 0.1 documentation

https://bioinf.comav.upv.es/publications.html

Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations. The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato. Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding. Plant Mol...

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cucurbigene.upv.es

Zucchini genome v3.1

https://cucurbigene.upv.es/genome-v3.1

Genetic map zucchini x scalop. Genectic maps zs and ps. Genome v3.1 Disclamer. These data have been funded and produced by COMAV s Bioinformatics and Genomics and Cucurbits Breeding groups. This pre-publication data is preliminary and may contain errors and be incomplete. The purpose of this policy is to make available the data to scientific community to facilitate the research on C. pepo. The data may be freely downloaded and used by all who respect the restrictions in the previous paragraph. While ...

cucurbigene.upv.es

Trancriptome v3

https://cucurbigene.upv.es/db/transcriptome_v3

Genetic map zucchini x scalop. Genectic maps zs and ps. These data have been funded and produced by COMAV s Bioinformatics and Genomics and Cucurbits Breeding groups. This pre-publication data is preliminary and may contain errors and be incomplete. The purpose of this policy is to make available the data to scientific community to facilitate the research on C. pepo. Download the C.pepo trancriptome v3 here. Instituto para la Conservación y Mejora de la Agrodiversidad Valenciana (COMAV). Universidad ...

cucurbigene.upv.es

Transcriptome v1

https://cucurbigene.upv.es/db/transcriptome_v1

Genetic map zucchini x scalop. Genectic maps zs and ps. 526731, 454 sequences. Cucurbita pepo L. ssp. pepo. Lleaves, flowers and roots. 413612, 454 sequences. Cucurbita pepo L. ssp. pepo. Lleaves, flowers and roots. 399110, 454 sequences.

github.com

JoseBlanca (Jose Blanca) · GitHub

https://github.com/JoseBlanca

Universidad Politecnica Valencia / COMAV. X6a;blanca@upv.es. Http:/ bioinf.comav.upv.es. Nov 24, 2009. Little sequence file utilities meant to work within Unix pipelines. Vim scripts and configuration to ease the python programming using vim. Franklin library for NGS sequencing analysis. Easy and simple parallelization tool. 219 contributions in the last year. Summary of pull requests, issues opened, and commits. Learn how we count contributions. Pushed 1 commit to JoseBlanca/markdown-folding.

melogene.upv.es

Transcriptome

https://melogene.upv.es/db/transcriptome_v1

melogene.upv.es

Index of /

https://melogene.upv.es/files

Melogene v1 libraries.pdf.

cucurbigene.upv.es

Run

https://cucurbigene.upv.es/tools/blastplus/run

Genetic map zucchini x scalop. Genectic maps zs and ps. Cucurbita pepo comav transcriptome v1. Cucurbita pepo comav transcriptome v3. Cucurbita pepo icugi unigenes v1. Zucchini genome v3.1. Zucchini genome v3.2.

melogene.upv.es

Acknowledgement

https://melogene.upv.es/acknowledgements

The design of this page has been partyally funded by ACOMP/2013/141 GV.

melogene.upv.es

Run

https://melogene.upv.es/tools/blastplus/run

Icugi Melo Unigenes v4.

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Bioinformatics & genomics — Bioinformatics at COMAV 0.1 documentation

The COMAV institute is devoted to the preservation of the horticultural plant variability and to the plant breeding on horticultural species. To accomplish these goals we have developed some software that it might be of some use to other researchers like ngs backbone or sff extract. We also provide analysis and technical support to other molecular genetic researchers. Our main research interests are:. Genomic and transcriptomic analysis. Development of genetic markers. Analysis of NGS sequences.

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