The institute's aim is to investigate the history of humankind with the help of comparative analyses of different genes, cultures, cognitive abilities, languages and social systems of past and present human populations as well as those of primates closely related to human beings.
http://bioinf.eva.mpg.de/
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Max Planck Institut - Department of Genetics/Bioinformatics | bioinf.eva.mpg.de Reviews
https://bioinf.eva.mpg.de
The institute's aim is to investigate the history of humankind with the help of comparative analyses of different genes, cultures, cognitive abilities, languages and social systems of past and present human populations as well as those of primates closely related to human beings.
bioinf.eva.mpg.de
Anfo Short Read Aligner
https://bioinf.eva.mpg.de/anfo
Anfo Short Read Aligner/Mapper. Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead). The current version is 0.98. In principle, Anfo ...
BamTable
https://bioinf.eva.mpg.de/BamTable
BamTable — a basic filter for BAM files. BamTable filters sorted bam files according to a configurable set of criteria and prints a table with the number of A, C, G and T bases that passed filtering for each position in the selected range. Precompiled binaries are available for 64 bit linux machines: BamTable linux64. The complete source is available as tarball: BamTable-0.1.2.tar.gz. A man page ( BamTable.1. Is included in the source package. A pdf of the man page is available here: BamTable.pdf. BamTab...
PatMaN
https://bioinf.eva.mpg.de/patman
PatMaN — a DNA pattern matcher for short sequences. Patman searches for short patterns in large DNA databases, allowing for approximate matches. It is optimized for searching for many small pattern at the same time, for example microarray probes. Patman is available as a tarball. The package can be unpacked by running. Tar -vxzf patman-1.2.2.tar.gz. And compiled and installed using. PatMaN: rapid alignment of short sequences to large databases. Bioinformatics. 2008 Jul 1;24(13):1530-1.
Biohazard
https://bioinf.eva.mpg.de/biohazard
Bioinformatics Tools in Haskell. This is a collection of miscellaneous stuff that deals mostly with high-throughput sequencing data. I took some of my throw-away scripts that had developed a life of their own, separated out a library, and cleaned up the rest. Everything is licensed under the GPL and naturally comes without any warranty. Most of the stuff here is written in Haskell. To compile it, you should install (or have your friendly sysadmin install for you) the Glasgow Haskell Compiler. Included is...
Max Planck Institut - Department of Genetics/Bioinformatics
https://bioinf.eva.mpg.de/leehom
LeeHom: Bayesian reconstruction of ancient DNA fragments. All software provided on this website comes without any warranty, use it at your own risk. Please find the latest version of the code and documentation on our github page :. For the latest version, you can either git clone the repository using the following command:. Git clone - recursive https:/ github.com/grenaud/leeHom.git. Or click on the leehom.tar.gz. To download the leehom library as a zipped tar file. As a zipped tar file.
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UCL-CS Bioinformatics: Introduction
Ensure you enter your valid MODELLER key via the BioSerf tab. You input looks like it may be a multiple sequence alignment, please ensure it is in valid fasta format and that all sequences are the same length. UCL Department Of Computer Science. The Bioinformatics Group at University College London is headed by Professor David Jones. And was originally founded as the Joint Research Council funded Bioinformatics Unit within the Department of Computer Science. Secondary structure prediction (PSIPRED).
Default Web Site Page
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CompBio & Bioinf @ UniUd
CompBio and Bioinf @ UniUd. Computational Biology and Bioinformatics. Research group at the Department of Mathematics, Computer Science and Physics. In the implementation, the parallelization of programmable graphics cards (GPGPU) was also used. Cancer, Development and Complexity (CDAC 2018). Feb 21, 2018. 16th International Conference on Computational Methods in Systems Biology. Nov 30, 2017. The conference will to bring together researchers from across biological, mathematical, computational, and physi...
BIOINF - Informatika - biológusoknak
BIOINF - Informatika - biológusoknak. A tárgyhoz tartozó előadást és gyakorlatot csak párhuzamosan lehet teljesíteni, ezért a Neptunban mindkettőt fel kell venni! Csak előadást nem lehet teljesíteni, így aki a későbbiekben nem jut be gyakorlatra, az a saját érdekében, az előadásról jelentkezzen le. A gyakorlatok létszámával kapcsolatos fontos információ:. Tantárgy címe, kódja. ELTE, Informatikai Kar, Média- és Oktatásinformatika Tanszék. Biológia Bsc szak nappali tagozat. A portál motorja: CMSimple.
Max Planck Institut - Department of Genetics/Bioinformatics
Schmutzi - estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA. DeML - Maximum likelihood demultiplexing. LeeHom - Bayesian reconstruction of ancient DNA fragments. FreeIbis - new GPL version of Ibis with calibrated quality scores. Ibis - Improved base identification system for the Illumina Genome Analyzer. Tools for Multiplex sequencing on the Illumina platform. ANFO - a mapper for ancient DNA. Biohazard - Bioinformatics library and assorted tools in Haskell.
Bioinformatics Group of FBB MSU
Bioinformatics Group of FBB MSU. Andrey A. Mironov. Aleksandra B. Rakhmaninova. Mikhail S. Gelfand. Dmitri D. Pervouchine. SDPpred (Specificity-Determining Positions Prediction) Server [version 0.1]. Server for multiple alignment of RNA sequences. EDAS: EST Derived Alternative Splicing Database. Subscribe to Mironov group meeting.
SFI Bioinformatics Support Server
Providing bioinformatics support for SFI-BIO funded projects. Main page: News and Events. Taster Bioinformatics Workshops in Python, R and Galaxy were held at the end of August, 2015:. Scientific programming with Python. Web-based bioinformatics analysis with Galaxy. Bioinformatics support information session. Date: 30th June, 2015. Location: TBSI Knowledge Exchange. Slides: PowerPoint, 12 MB. See also older events. Last modified: Sun 13 Dec 2015 16:58:53 GMT by Karsten Hokamp.
EMBnet Colombia - Centro de Bioinformática del Instituto de Biotecnología
Centro de Bioinformática del Instituto de Biotecnología : . Puede consultar nuestra página de ayuda para mayor información acerca de estas herramientas. EMBnet Colombia es el nodo Colombiano de la Red Europea de Biología Molecular. Embnet), una red mundial de centros en bioinformática con nodos en los 5 continentes. EMBnet Colombia se encuentra a cargo del Centro de Bioinformática del Instituto de Biotecnología. CBIB) de la Universidad Nacional de Colombia. Universidad Nacional de Colombia.
Nita Parekh
Understanding Plant Stress Using Network-based Approaches. Structural Variation Analysis Using NGS data. Please email your CV to apply for the position. Contact: Nita Parekh, Associate Professor. Centre for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology-Hyderabad. Email: nita@iiit.ac.in.
Bioinf
