bioinformatics.ucdavis.edu

UC Davis Bioinformatics Core

The Bioinformatics Core at the UC Davis Genome Center. Has over a decade of experience in helping solve a wide variety of bioinformatics problems, large and small. We have three main areas of expertise:. From genomics, and other projects, to help drive research forward. Helping build high-performance software and hardware. Providing acclaimed training workshops. That will equip people with in-demand bioinformatics skills. Or read some of the reviews. We look forward to working with you! February 8, 2018.

http://bioinformatics.ucdavis.edu/

OVERVIEW OF bioinformatics.ucdavis.edu

TRAFFIC RANK

>1,000,000

REVIEWS

0

PAGES IN THIS WEBSITE

15

LINKS TO THIS WEBSITE

CONTACTS

ADDRESSES

SOCIAL LINKS

ONLINE SINCE

WEBSITE DETAILS

SEO

PAGES

SIMILAR SITES

TRAFFIC RANK FOR BIOINFORMATICS.UCDAVIS.EDU

TODAY'S RATING

>1,000,000

TRAFFIC RANK - AVERAGE PER MONTH

BEST MONTH

May

AVERAGE PER DAY Of THE WEEK

HIGHEST TRAFFIC ON

Thursday

TRAFFIC BY CITY

Sign up

CUSTOMER REVIEWS

Average Rating: 4.0 out of 5 with 11 reviews

5 star

3

4 star

5

3 star

3

2 star

0

1 star

0

Hey there! Start your review of bioinformatics.ucdavis.edu

AVERAGE USER RATING

Write a Review

WEBSITE PREVIEW

LOAD TIME

0.2 seconds

FAVICON PREVIEW

16x16
32x32
64x64

CONTACTS AT BIOINFORMATICS.UCDAVIS.EDU

ADD CONTACT

Login

TO VIEW CONTACTS

Remove Contacts

FOR PRIVACY ISSUES

CONTENT

PAGES IN
THIS WEBSITE

15

SSL

EXTERNAL LINKS

108

SITE IP

128.120.243.16

LOAD TIME

0.239 sec

SCORE

6.2

PAGE TITLE

UC Davis Bioinformatics Core | bioinformatics.ucdavis.edu Reviews

<META> DESCRIPTION

The Bioinformatics Core at the UC Davis Genome Center. Has over a decade of experience in helping solve a wide variety of bioinformatics problems, large and small. We have three main areas of expertise:. From genomics, and other projects, to help drive research forward. Helping build high-performance software and hardware. Providing acclaimed training workshops. That will equip people with in-demand bioinformatics skills. Or read some of the reviews. We look forward to working with you! February 8, 2018.

<META> KEYWORDS

1 data analysis

2 overview

3 rna seq analysis

4 software

5 publications

6 research computing

7 training

8 events

9 documentation

10 frequently asked questions

CONTENT

Page content here

KEYWORDS ON PAGE

data analysis,overview,rna seq analysis,software,publications,research computing,training,events,documentation,frequently asked questions,reviews,policies,accommodations,getting around davis,rates,news,people,intelligently analyzing data,recent news,open

SERVER

Apache/2.4.7 (Ubuntu)

POWERED BY

PHP/5.5.9-1ubuntu4.23

CONTENT-TYPE

utf-8

GOOGLE PREVIEW

UC Davis Bioinformatics Core | bioinformatics.ucdavis.edu Reviews

https://bioinformatics.ucdavis.edu

The Bioinformatics Core at the UC Davis Genome Center. Has over a decade of experience in helping solve a wide variety of bioinformatics problems, large and small. We have three main areas of expertise:. From genomics, and other projects, to help drive research forward. Helping build high-performance software and hardware. Providing acclaimed training workshops. That will equip people with in-demand bioinformatics skills. Or read some of the reviews. We look forward to working with you! February 8, 2018.

SUBDOMAINS

bioshare.bioinformatics.ucdavis.edu

BIOSHARE - Default title

Update: July 15, 2015. For improved performance, Bioshare has been migrated to a new server. In addition to hopefully being a bit snappier, Bioshare also now has support for downloading files via SFTP! For instructions on downloading via SFTP, while viewing a share, click on "Download" then "SFTP". Please report any issues you may encounter to webmaster@genomecenter.ucdavis.edu. Bioshare was developed by the UC Davis Bioinformatics Core. And is hosted on Github.

phaseolusgenes.bioinformatics.ucdavis.edu

PhaseolusGenes, Bean Breeder's Molecular Marker Toolbox

PhaseolusGenes is a web resource for identifying and exploring markers, quantitative-trait loci (QTL), and simple sequence repeat (SSR) region information for Phaseolus vulgaris. Use this database to find marker information and explore them through the associated UCSC Genome Browser. To use PhaseolusGenes, enter a search term to the right or click below for advanced options. You may also enter a sequence to use our online blast tool to blast a sequence against the soybean genome. How to use PhaseolusGenes.

batchprimer3.bioinformatics.ucdavis.edu

BatchPrimer3

wiki.bioinformatics.ucdavis.edu

Bioinformatics Core Wiki

From Bioinformatics Core Wiki. The Bioinformatics core provides expertise and infrastructure to carry out acquisition, curation, distribution of complex data sets as well as to develop and perform computations, analyses and simulations addressing a wide variety of biological questions from genomics and systems biology. The services provided by the core is on a recharge basis to all campus researchers. Website Design and Hosting. UCD Bioinformatics Mailing List. Collaborating Wetlab core facilities. We us...

training.bioinformatics.ucdavis.edu

UC Davis Bioinformatics Training Program | Bioinformatics workshops presented by the University of California, Davis Bioinformatics Core

UC Davis Bioinformatics Training Program. UC Davis Bioinformatics Training Program. Bioinformatics workshops presented by the University of California, Davis Bioinformatics Core. Bioinformatics Training from the University of California. Seek to change that by offering a number of varied length workshops focusing on various aspects of bioinformatics and biostatistics. For more information on training offerings, you may check back here periodically, or contact us. Directly with any questions. The Bioinfor...

slims.bioinformatics.ucdavis.edu

Login

Lab information management system. Click here to register!

INTERNAL PAGES

bioinformatics.ucdavis.edu

1

Announcing the Assemblathon ‘publish for free’ contest | UC Davis Bioinformatics Core

http://bioinformatics.ucdavis.edu/announcing-the-assemblathon-publish-for-free-contest

Announcing the Assemblathon ‘publish for free’ contest. August 1, 2014. Filed under Other news. Thanks to the success of the Assemblathon 2. Project – which was lead by Bioinformatics Core members Keith Bradnam, Joseph Fass, and director Ian Korf – the resulting paper won the 2013 BioMed Central Research Award for Open Data. As mentioned. On the official Assemblathon site. August 2016 Galaxy RNA-Seq, Exome-Seq, and Variant-finding Workshop. June 2016 Galaxy RNA-Seq and ChIP-Seq Workshop. June 4, 2016.

2

July | 2013 | UC Davis Bioinformatics Core

http://bioinformatics.ucdavis.edu/2013/07

The Assemblathon 2 paper features contributions from the UC Davis Bioinformatics Core. July 23, 2013. Filed under Data Analysis. The 2013 RNA-Seq Workshop: From Pipette to P-value! Sept 9-11, 2013). July 2, 2013. August 2016 Galaxy RNA-Seq, Exome-Seq, and Variant-finding Workshop. June 2016 Galaxy RNA-Seq and ChIP-Seq Workshop. Finding variations in canine tumors may provide insight into common pathways for human cancer. June 4, 2016. Bioinformatics Core analyst/programmer Nikhil Joshi was co-author on a...

3

People | UC Davis Bioinformatics Core

http://bioinformatics.ucdavis.edu/people

Matt Settles (settles@ucdavis.edu). UC Davis Genome Center. 1319 Genome and Biomedical Sciences Facility. Dr Joseph Fass, Lead Scientific Programmer (jnfass@ucdavis.edu). Dr Monica Britton, Sr. Bioinformatics Analyst (mtbritton@ucdavis.edu). Monica is the resident biologist in the Core (living proof that a bench scientist can learn to use command line), with a PhD in Genetics. She enjoys discussing experiments with researchers, analyzing data, and organizing workshops. Nikhil is a bioinformatics programm...

4

January | 2015 | UC Davis Bioinformatics Core

http://bioinformatics.ucdavis.edu/2015/01

Using Galaxy for Analysis of High Throughput Sequence Data, September 14-18, 2015. January 13, 2015. Waitlist What will be covered? Using the Linux Command Line for Analysis of High Throughput Sequence Data, June 15-19, 2015. Register What will be covered? 2015 Bioinformatics Training Schedule Announced. January 12, 2015. The Bioinformatics Core is pleased to announce three training opportunities which will be held at UC Davis in 2015: March 23-26: RNA-Seq and ChIP-Seq Analysis with Galaxy June 15-19: Us...

5

June | 2014 | UC Davis Bioinformatics Core

http://bioinformatics.ucdavis.edu/2014/06

Announcing our newest Amazon Machine Image. June 28, 2014. Filed under Research computing. We are pleased to announce the release of our newest Galaxy/command-line Amazon Machine Image. The new features of this AMI include updated versions of all of the bioinformatics software, updated and fixed Galaxy tool interfaces, and a Galaxy FTP server that makes it easy to transfer large files to Galaxy. Instructions on how to launch… Read more ». August 2016 Galaxy RNA-Seq, Exome-Seq, and Variant-finding Workshop.

UPGRADE TO PREMIUM TO VIEW 10 MORE

TOTAL PAGES IN THIS WEBSITE

15

LINKS TO THIS WEBSITE

dnatech.genomecenter.ucdavis.edu

NGS Library Construction | DNA Technologies Core

http://dnatech.genomecenter.ucdavis.edu/illumina-sequencing-all-about-libraries

DNA Technologies & Expression Analysis Cores – Home. Illumina Sequencing (HiSeq & MiSeq). Illumina HiSeq 3000/4000 Sequencing. Getting Started – Before You Submit Samples. Sample Requirements & Library Requirements. Sample Submission, Shipping & Scheduling. Bioinformatics, Metabolomics, Proteomics, Tilling – Other Genome Center Cores. DNA/RNA Isolation, 16S Sequencing, qPCR, Sanger , Cancer Genetics – Other UCD Cores. Host Microbe Systems Core — 16S. RT-qPCR Core — DNA/RNA extractions, Taqman. For consis...

tilling.ucdavis.edu

How to Place an Order - Tilling

http://tilling.ucdavis.edu/index.php/How_to_Place_an_Order

Create a Billing Profile. Optional - Alternative Primer Sets. To express your interest in TILLING. In the e-mail, please let us know whether you are affiliated with UCD, non-profit, or industry. This will affect the rates selected for billing. We will set up a TILLING account for you to place orders on our ordering page. Create a Billing Profile. Create a billing profile at the Genome Center Core Services page. After you have your login, you can go to our order page. To submit an order. We are currently ...

tilling.ucdavis.edu

NSF Award Information - Tilling

http://tilling.ucdavis.edu/index.php/NSF_Award_Information

DBI-0822383. TRPGR:Efficient identification of induced mutations in crop species by ultra-high throughput DNA sequencing. Improve the efficiency of mutation discovery (UCD). Develop protocols that combine oligo capture of barcoded superpooled samples with Solexa sequencing for efficient mutation detection (FHCRC). Devise the optimal target number and pooling for mutation discovery, and the informatic pipeline for analysis (UCD). Define and optimize approaches for TILLING polyploid genomes (UCD).

tilling.ucdavis.edu

Frequently Asked Questions - Tilling

http://tilling.ucdavis.edu/index.php/Frequently_Asked_Questions

How long will it take? Once our queue is filled, about 3-6 months. Depending on the wait list for our HiSeq2000, it could take longer. Sequencing itself takes a full month. What is a queue? We need to have enough orders before we can start processing orders. Our queue is 20-30 orders. In the event where we do not have many orders, we may be able to offer a smaller screening option. The screen size options will range from units of 512 individuals and the prices will be adjusted proportionately. Can I subm...

tilling.ucdavis.edu

Other Tilling Projects - Tilling

http://tilling.ucdavis.edu/index.php/Other_Tilling_Projects

TILLING PROJECTS IN OTHER LABORATORIES. University of Bristish Columbia. Links at UC Davis. UC Davis Genome Center. Section of Plant Biology. Retrieved from " http:/ tilling.ucdavis.edu/index.php? How to Place an Order. TILLING at Other Sites. This page was last modified on 4 November 2014, at 17:09. This page has been accessed 9,104 times. Funding provided by the National Science Foundation. Plant Genome Project Program (Project # 0077774).

tilling.ucdavis.edu

Arabidopsis TILLING - Tilling

http://tilling.ucdavis.edu/index.php/Arabidopsis_TILLING

Results with 4x arabidopsis population. We provide two populations to TILL arabidopsis.The first (being implemented) is the diploid A. thaliana population developed by STP in Seattle. The second is a tetraploid population developed at UCD. The choice of system should be helped by the description below. This is the well proven population. From which almost 10,000 mutations. The DNA is being rearrayed to fit the 3D-pooling. Mutant -/-/ / x diploid /. F1 -/ / x diploid /. We have a set of over 500 lines&#46...

korflab.ucdavis.edu

Korf Lab

http://korflab.ucdavis.edu/index.html

Unix and Perl Course. This is the website for Ian Korf's research group at the Genome Center. Since 2004 we have been developing bioinformatics solutions to help tackle problems - both large and small - in the fast-moving field of genomics. Much of the research in our lab builds on collaborations with others, both at UC Davis and also further afield. Explore this site to find out more about what we do. In our lab, and the software tools and data. That are available for you to use. Korf Lab in the news.

korflab.ucdavis.edu

Unix & Perl Primer for Biologists

http://korflab.ucdavis.edu/Unix_and_Perl/index.html

Unix and Perl Course. Unix and Perl Primer for Biologists. We have written a basic introductory course for biologists to learn the essential aspects of the Perl programming language. This started as a course for grad students at UC Davis. And we then ran it as a one week intensive course for anyone on campus who was interested (sponsored by the UC Davis Genome Center. The feedback from these courses was very positive and so we have decided that we should make it available to anyone who is interested.

korflab.ucdavis.edu

Software & Data

http://korflab.ucdavis.edu/software.html

Unix and Perl Course. We can help you! Some of our recent research has involved using our CEGMA software pipeline. Assess how many genes are likely to be present/absent in that assembly and. Accurately predict the structures of a set of conserved genes that we believe are present in all eukaryotes. Please use this page. To submit CEGMA requests to us. Korf Lab - Software and Databases. A Perl module that makes it easy to process FASTA formatted files. Datasets and software used for our Bind-N-Seq paper.

UPGRADE TO PREMIUM TO VIEW 99 MORE

TOTAL LINKS TO THIS WEBSITE

108

OTHER SITES

bioinformatics.tudelft.nl

Welcome | The Delft Bioinformatics Lab

The Delft Bioinformatics Lab. The Delft Bioinformatics Lab performs research and educates students in the fields of. Bioinformatics for health and disease and bioinformatics for microbiology. Divslide" data-cycle-speed="1000" data-cycle-timeout="7500" data-cycle-overlay=".blog-slides-overlay" data-cycle-overlay-template=". Data-cycle-prev="#blog-slides .cycle-prev" data-cycle-next="#blog-slides .cycle-next". Kluyver Centre for Genomics of Industrial Fermentation. DBL Colloquium: Dick de Ridder @ Room=?

bioinformatics.ua.pt

UA.PT Bioinformatics | Bioinformatics and Computational Biology

Universidade de Aveiro, DETI / IEETA. 3810-193 Aveiro, Portugal. Jlo( at )ua.pt. 351) 234 370 500. Our group, funded mainly by several National. Joins people from several research areas, namely molecular biology. The group has been gathering experience on different bioinformatics. Methodologies and it is one of the few Portuguese groups doing research on this field. We study algorithmic questions and computational solutions inspired by and related to biological and biomedical problems.

bioinformatics.ubc.ca

Graduate Program in Bioinformatics: Information about UBC's Bioinformatics program

The University of British Columbia. A place of mind. The University of British Columbia. Graduate Program in Bioinformatics. Applicationhttp:/ bioinformatics.sites.olt.ubc.ca/apply/. Alumnihttp:/ bioinformatics.sites.olt.ubc.ca/alumni/. NSERC-CREATE Internships due: April 30, 2018. NSERC-CREATE Internships application deadline for Sept 2018 intake is April 30, 2018. See http:/ bcbioinformaticsgrad.ca/internship/ for details. Application deadlines for the September 2018. The Bioinformatics Graduate Progra...

bioinformatics.uccollege.edu.in

UC College Department of Bio Informatics

UC College Department of. Back to main site. Congrats to BIITP Trainees. Mr Jackson John, Ms.Treesa Jojo Kodiyan and Ms.Anjumol Thomas were selected under Bioinformatics Industrial Training Programme by DBT in association with Govt. Of India. They will be placed in industry after their training period. The large amount of biological information generated through a vast pool of scientists, R&D in reputed companies and universities globally needs to be retrieved, managed and interpreted. Bioinform.

bioinformatics.ucd.ie

UCD Bioinformatics

University College Dublin is an established centre of excellence in bioinformatics. There are dedicated bioinformatics facilities at the Conway Institute of Biomolecular and Biomedical Research. The following bioinformatics research teams are based at UCD:. Multiple alignment; promoters; microarray and proteomics. Motif/oligopeptide function; functional polymorphism. Machine learning; protein structure prediction. Mass spec. Proteomics; protein interactions. Virulence Characteristics In Pathogenic Yeasts.

bioinformatics.ucdavis.edu

UC Davis Bioinformatics Core

The Bioinformatics Core at the UC Davis Genome Center. Has over a decade of experience in helping solve a wide variety of bioinformatics problems, large and small. We have three main areas of expertise:. From genomics, and other projects, to help drive research forward. Helping build high-performance software and hardware. Providing acclaimed training workshops. That will equip people with in-demand bioinformatics skills. Or read some of the reviews. We look forward to working with you! February 8, 2018.

bioinformatics.uchc.edu

Untitled

Sorry, your browser doesn't support Java(tm). Tools, Tables and Templates.

bioinformatics.ucla.edu

UCLA | Bioinformatics

Student Blog and Twitter Feed. Helpful Information for Current Students. Introduction to the Program. Bioinformatics Ph.D. Students. Undergraduate and Masters Research. Bioinformatics Minor Course Requirements. Bioinformatics Minor End-of-Year Celebration. Student Blog and Twitter Feed. Helpful Information for Current Students. Introduction to the Program. Bioinformatics Ph.D. Students. Undergraduate and Masters Research. Bioinformatics Minor Course Requirements. Annual Retreats for Students and Faculty.

bioinformatics.ucmerced.edu

Bis1_homework.html

University of California, Merced. Population Allele Simulation file. Tree of Life and Phylogenetic Trees:. 10 DNA sequence file. 11 Protein Sequence file. Excel workbook for Pouplation Modeling. This is a Microsoft Excel file, but you should be able to open this file with any spreadsheet application software. For Assignment 4 - Extra point. Study Predator-Prey Phase Plots. Note: Java-enable browser required.).

bioinformatics.uconn.edu

Home | Bioinformatics Facility

Institute for Systems Genomics. Torrey Life Sciences Bldg., Rm. 75. 75 N Eagleville Rd, Unit-3043. Storrs, CT 06269-3043. Jeffrey W. Lary. E-mail: Jeffrey.Lary@Uconn.edu. E-mail: J.P.Gogarten@Uconn.edu. Paul O. Lewis. E-mail: Paul.Lewis@Uconn.edu. Project design and data analysis consultation. Bioinformatics support for next generation sequencing. Access to computational resources. Bioinformatics workshops and training. The Bioinformatics Facility Mailing List. Follow us on Twitter. August 7, 2015. Genom...

bioinformatics.ucr.edu

Bioinformatics Labs

Http:/ www.bioinformatics.ucr.edu.