bioinformin.net

Bioinformin

This is a personal web, my notes on bioinformatics. The public part contains intro to flow cytometry. Principle of protein array platform. And tips on how to start with R. The very old and ancient blog posts . The new ones are here. Http:/ biostat.mc.vanderbilt.edu/wiki/Main/ClinStat. Http:/ www.nature.com/collections/qghhqm/pointsofsignificance. Http:/ www.quora.com/How-is-Hadley-Wickham-able-to-contribute-so-much-to-R-particularly-in-the-form-of-packages. Does not have any repository related statistics.

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This is a personal web, my notes on bioinformatics. The public part contains intro to flow cytometry. Principle of protein array platform. And tips on how to start with R. The very old and ancient blog posts . The new ones are here. Http:/ biostat.mc.vanderbilt.edu/wiki/Main/ClinStat. Http:/ www.nature.com/collections/qghhqm/pointsofsignificance. Http:/ www.quora.com/How-is-Hadley-Wickham-able-to-contribute-so-much-to-R-particularly-in-the-form-of-packages. Does not have any repository related statistics.

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5 nature web collection

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Bioinformin | bioinformin.net Reviews

https://bioinformin.net

This is a personal web, my notes on bioinformatics. The public part contains intro to flow cytometry. Principle of protein array platform. And tips on how to start with R. The very old and ancient blog posts . The new ones are here. Http:/ biostat.mc.vanderbilt.edu/wiki/Main/ClinStat. Http:/ www.nature.com/collections/qghhqm/pointsofsignificance. Http:/ www.quora.com/How-is-Hadley-Wickham-able-to-contribute-so-much-to-R-particularly-in-the-form-of-packages. Does not have any repository related statistics.

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bioinformin.net

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Bioinformin

http://www.bioinformin.net/index.php

This is a personal web, my notes on bioinformatics. The public part contains intro to flow cytometry. Principle of our protein array platform. And tips on how to start with R. Does not have any repository related statistics. The way around it is gitstats. In Ubuntu install with:. Sudo apt-get install gitstats. Gitstats /home/bioinformin/exomeMPS/ /home/bioinformin/exomeMPS stats. Firefox /home/bioinformin/exomeMPS stats/index.html. History of shell commands. Ndash; search term –. Get to COMMAND mode.

2

Linux tips

http://www.bioinformin.net/bioinfomics/ubuntu.php

Linux tips - shell. Time, how long is the machine running, average loads. Send message to all user (works over ssh too). Run: wall - enter - write message - Ctrl-D. Dpkg -L package name. Where the package name is installed. Where the command name is run from. Rscript -e 'print("Hello World")'. Run R directly from shell. Output screen into output.log file. Head -n 4 reboots.csv tail -n 3. Find /usr -name *fastq. Command line file search (look in /usr for files ending fastq). Name "*.txt" -type f. Quit (it...

3

cytometry

http://www.bioinformin.net/cytometry.php

With stress on data analysis. Flow cytometry measures light scattering properties of cells (correlate to cell sizes and cell granularities) and fluorescence emissions of molecules attached to cells (usually conjugates of fluorochrome and antibodies to cell surface proteins). Current cytometers measure quantities of up to 17 surface molecules on each single cell passing through cytometer. Many (thousands to millions) individual cells are measured in a single experiment. Cells are labelled with fluorescent...

4

protein arrays antibody database

http://www.bioinformin.net/protein_arrays.php

Protein arrays are assays measuring abundances of large number of proteins in a sample in one experiment. There is number of protein array types. Description of one particular approach follows:. Protein bead arrays - principle. Protein bead arrays consists of beads covered with antibodies. One bead has antibodies of only one specificity. Each array contains many bead types which differ in their fluorescence properties forming thus. Wu W, Slåstad H, de la Rosa Carrillo D, Frey T, Tjønnfjord G, Boretti E, ...

5

R

http://www.bioinformin.net/bioinfomics/r.php

Great overall, using for ggplot2 related. R and Bioconductor Manual. Hadley Wickham's courses, ggobi and Co. From basics, covering advanced graphics. Perfect. Overview of task related packages. This one for flow. Hadley Wickham's R Vocabulary. List of useful functions. List of useful functions, by Tom Short. Statberkeley's nice intor to functions, scoping, environments. Google's R Style Guide. It's good to have consistent style, why not start here? R intro 4.R. R intro 5.R. 160; if (! System.time( fo...

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bioinformin.net

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This is a personal web, my notes on bioinformatics. The public part contains intro to flow cytometry. Principle of protein array platform. And tips on how to start with R. The very old and ancient blog posts . The new ones are here. Http:/ biostat.mc.vanderbilt.edu/wiki/Main/ClinStat. Http:/ www.nature.com/collections/qghhqm/pointsofsignificance. Http:/ www.quora.com/How-is-Hadley-Wickham-able-to-contribute-so-much-to-R-particularly-in-the-form-of-packages. Does not have any repository related statistics.

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