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Ahmad's Blog

Computing, Genetics & Pretty Pictures

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Ahmad's Blog | bioinfornetics.blogspot.com Reviews
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Computing, Genetics &amp;amp; Pretty Pictures
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Ahmad's Blog | bioinfornetics.blogspot.com Reviews

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Computing, Genetics &amp;amp; Pretty Pictures

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1

Ahmad's Blog: Tips for those starting C programming

http://bioinfornetics.blogspot.com/2014/12/tips-for-those-starting-c-programming.html

Computing, Genetics and Pretty Pictures. Wednesday, 17 December 2014. Tips for those starting C programming. Since starting my PhD I have been coding in Perl again (yay) but I have also started coding in C. I've found C more difficult than I thought to get to grips with for such a familiar syntax. Here are some things that caught me out and need to be remembered. Remember to cast your results, arguments and expressions to exactly what is requested/expected. I was using the ceil(). While ( j i ) {. Choose...

2

Ahmad's Blog: Drupal 7: Referencing Views from inside Panel Pages

http://bioinfornetics.blogspot.com/2013/10/drupal-7-referencing-views-from-inside.html

Computing, Genetics and Pretty Pictures. Monday, 28 October 2013. Drupal 7: Referencing Views from inside Panel Pages. Example Scenario: I have created a Panel Page (e.g. Cars) and I want to display a View list of Parts associated with any Car loaded through that Panel page. Each Car node contains a reference (Entity Reference) field (field parts ref) to all the parts associated with it. Get node id of parent passed from the panel and load the node into memory. Nid = $argument- view- args[1];. That's it&...

3

Ahmad's Blog: January 2015

http://bioinfornetics.blogspot.com/2015_01_01_archive.html

Computing, Genetics and Pretty Pictures. Monday, 26 January 2015. Error running Valgrind on Gentoo Linux: the strlen problem. If you have ever tried to install Valgrind on Gentoo Linux you may have come across this error when you try to run the program:. 20032= Memcheck, a memory error detector. 20032= Command: ./1.x. Valgrind: Fatal error at startup: a function redirection. Valgrind: which is mandatory for this platform-tool combination. Valgrind: cannot be set up. Details of the redirection are:. As it...

4

Ahmad's Blog: April 2013

http://bioinfornetics.blogspot.com/2013_04_01_archive.html

Computing, Genetics and Pretty Pictures. Wednesday, 3 April 2013. Drupal node structure and adding/modifying values for Entity References. Here is an example of a node I created of the Content Type "phenotype" in a project I'm working on. In Black are the fields that Drupal manages and in Green are the fields that I created. Node: stdClass Object (. Field phenotype id] = Array ( [und] = Array ( [0] = Array ( [value] = 2 ) ) ). Field score] = Array ( [und] = Array ( [0] = Array ( [value] = 1.0 ) ) ).

5

Ahmad's Blog: Installing PEAR packages through Composer

http://bioinfornetics.blogspot.com/2014/01/installing-pear-packages-through.html

Computing, Genetics and Pretty Pictures. Tuesday, 14 January 2014. Installing PEAR packages through Composer. Did you know that you can obtain PEAR. And you don't need to install or set up PEAR or configure global settings! A work colleague was talking about difficulties setting up CPAN for Perl on a server and that got me thinking about dependency managers and repositories and the options available in the PHP world. The modern way to manage dependencies and find libraries/packages is using Composer.

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Ahmad's Blog

Computing, Genetics and Pretty Pictures. Friday, 1 December 2017. Getting DNA out of a FASTA file by position or chromosome id. A common task in bioinformatics is to read a FASTA file to get a sequence from it. You might want to grab a whole chromosome from a genome (multi-)FASTA file, or you might want to grab a bit of DNA from a single chromosome by providing the start position and end position (range). In both cases, I have you covered:. Links to this post. Wednesday, 22 November 2017. In this post I ...

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