treegraph.bioinfweb.info
TreeGraph 2 - XTG Documentation
http://treegraph.bioinfweb.info/Development/XTG
XTG Documentation for version 1.2. Raph format) is a XML format used by TreeGraph 2 to read and write its documents. This page is the documentation of the XML Schema for XTG. Documentation of 1.1. Documentation of 1.2. Note that version 1.0 was only used during the development stage and is not documented here. XTG article in the user help. Includes a XTG example). Element and Attribute Namespaces. Global element and attribute declarations belong to this schema's target namespace. This class is used by the.
treegraph.bioinfweb.info
TreeGraph 1
http://treegraph.bioinfweb.info/Version1
By Jörn Müller, Kai Müller. Here you can find the command line based precursor. Of TreeGraph 2. This is not the latest version of TreeGraph 2, which is GUI based and was a complete rewrite. The command line precursor offered some functionality that slightly differs from the current version. If you still have any TGF files created with TreeGraph 1, you can download it here to process them. The download of the latest version of TreeGraph 2 is available here. Which describes TreeGraph 2) instead.
treegraph.bioinfweb.info
Node/branch data - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Node/branch_data
Help - Node/branch data. Is used in TreeGraph 2 as a generic term that describes different types of data associated with a node or a branch. Different operations like deleting, copying or rescaling can be applied to one type of node/branch data in a whole document. A type of node/branch data is sometimes also referred to as node/branch data column (because it appears as discrete column in the table of the document window. For different purposes for each document. Types of node data. Stöver BC,.
treegraph.bioinfweb.info
Importing node/branch data - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Importing_node/branch_data
Help - Importing node/branch data. Besides importing node/branch data. From tree files (see Adding support values. TreeGraph 2 also allows to import annotations from tables in text format as they can be generated by every spread sheet application. The only condition is that the first column of that table contains unique values that can also be found in one node/branch data column. Eg Unique node names. Of the tree into which the table shall be imported. For the import by any node/branch data. Of the tree...
treegraph.bioinfweb.info
Exporting trees as graphics - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Exporting_trees_as_graphics
Exporting trees as graphics. Help - Exporting trees as graphics. Documents generated with TreeGraph 2 can be exported to different image formats and to PDF. They are always exported in the currently active view mode. You can also use this function to print your document (e.g. by exporting it to PDF and selecting the print. You can alternatively also use the " Export to PDF. Button in the tool bar. Portable Document Format (PDF). Scalable vector graphics (SVG). Portable network graphics (PNG). When you de...
treegraph.bioinfweb.info
Element formats - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Element_formats
Help - Element formats. Can be used to define the appearance of a single document element. In contrast to the document formats. That effect all elements in the document. To change element formats you can select Element formats. Option from the format menu. Or from the context menu, the tool bar or by using the keyboard shortcut F6. Which displays the element formats dialog. Element formats (until 2.0.24). Tabs of the element formats dialog. Tab is only active if a Scale bar. Or the scale bar. Elements th...
treegraph.bioinfweb.info
Set distance values by node/branch data - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Set_distance_values_by_node/branch_data
Set distance values by node/branch data. Help - Set distance values by node/branch data. TreeGraph allows to display node/branch data. Distance values (e.g. line width. You can choose any node/branch data column that contains numeric values as source. (The tutorial " Taxon counts as branch widths. Also demonstrates this feature.). This article describes this feature for the latest version of TreeGraph 2. For older versions the following articles are available:. Minimal / maximal value. These two values d...
treegraph.bioinfweb.info
Category:Index - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Category:Index
This alphabetical index lists all articles which are related to the latest version of TreeGraph 2. If you are using the latest version you should find the article you are searching for here. Otherwise you might want to go to the following page:. List of articles related to older versions of TreeGraph 2. Pages in category "Index". The following 78 pages are in this category, out of 78 total. Changing a document element ID. Collapsing nodes by support. Default node/branch data columns. Stöver BC,.
treegraph.bioinfweb.info
Document formats - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Document_formats
Help - Document formats. Affect the whole document and are not specific for a single document element. To change them you can select Document formats. From the format menu. Or from the context menu, the tool bar. Or use the keyboard shortcut F5. Which displays the document formats dialog. There are different document formats which can be accessed by the tabs of the document formats dialog. Document formats (until 2.0.24). Tabs of the document formats dialog. Label block overhang only on left side. It can...
treegraph.bioinfweb.info
Adding support values - TreeGraph help
http://treegraph.bioinfweb.info/Help/wiki/Adding_support_values
Help - Adding support values. In some studies not only the support from different analyses has been mapped onto the nodes but also the strongest support for a contradictory node was determined by inspection via eye. TreeGraph 2 automates this process with the Add support values. Function which can import annotations from any tree that may or may not have a differing topology and/or a different set of terminal nodes. The tutorial " Adding support values. Describes the use of this feature in detail. Where ...
