biomodels.caltech.edu
BioModels Database (Caltech mirror)BioModels Database homepage
http://biomodels.caltech.edu/
BioModels Database homepage
http://biomodels.caltech.edu/
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BioModels Database (Caltech mirror) | biomodels.caltech.edu Reviews
https://biomodels.caltech.edu
BioModels Database homepage
biomodels.caltech.edu
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/news
Direct access to the news of a given year: 2005. BioModels now provides 1516 literature-based models. It includes 613 curated and 903 non-curated models. Live now - an interactive map. Of molecular processes described by mechanistic models of neurodegenerative diseases. We are extremely happy to announce the 30th release of BioModels! The resource now provides 1483 literature-based models and 143,070 models automatically generated from pathway resources, and introduces additional and updated features.
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/taxonomy
List of taxonomic terms used in the annotation of literature based models (curated and non-curated branches):. Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1). Escherichia coli (strain K12). Escherichia coli str. K-12 substr. MG1655. H1N1 swine influenza virus. Human immunodeficiency virus 1. Influenza A virus (A/New Caledonia/20/1999(H1N1). Influenza A virus (strain A/X-31 H3N2). Lactococcus lactis subsp. cremoris (strain MG1363). Methanococcus maripaludis (strain S2 / LL).
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/static-pages.do?page=release_20140916
Hinxton, Tuesday 16. We are proud to announce the 28. Release of BioModels Database. Which introduces new models as well as additional features and an easier access thanks to an updated homepage. BioModels Database now publicly provides access to 144,282 models. This corresponds to 1,212 models published in the literature and 143,070 models automatically generated from pathway resources. Within this complete set, 548 models have been manually curated. Those models are fully MIRIAM. Terms usually provided...
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/noncuramodels
Browse - Non-curated models. The following fields are used to describe a model:. A unique string of characters associated with the model, which will never be re-used even if the model is deleted from the BioModels Database. The name of the model, as written in the model itself by its creator(s). The unique identifier of the reference publication describing the model, specified either as a PubMed. Identifier (PMID), or as a DOI. The date when the model was last modified.
BioModels Database (Caltech mirror)
http://biomodels.caltech.edu/webservices
With BioModels Web Services, users can programmatically access up-to-date information from BioModels Database without installing a local copy of the database. They provide a wide range of features for searching and retrieving models. Furthermore, some features can help users to extract interesting parts from a large model and assemble them into a fully valid submodel. For any comments or new feature enquiries, please feel free to contact us. Java library documentation (Javadoc). Get the library via Maven.
TOTAL PAGES IN THIS WEBSITE
20
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/modelmonth
View - Models of the month. Each "Model of the Month" is an article which explores the biological significance of a particular model from BioModels Database. Every article includes elements such as:. The description of the model itself and its results. The biological background of the model. A brief description of the biological processes that are encoded as a mathematical model. The biological role of each of the model elements. The diseases that are caused due to the malfunction of these elements.
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/diseases
List of disease related literature based models (from the curated and non-curated branches). Those models have been annotated with terms from the Human Disease Ontology. Online Mendelian Inheritance in Man. Or International Classification of Diseases. Auer2010 - Correlation between lag time and aggregation rate in protein aggregation. Insight into the correlation between lag time and [.]. Crespo2012 - Kinetics of Amyloid Fibril Formation. A generic crystallization-like model that describe [.]. Modelling ...
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/publmodels
Browse - Curated models. The following fields are used to describe a model:. A unique string of characters associated with the model, which will never be re-used even if the model is deleted from the BioModels Database. The name of the model, as written in the model itself by its creator(s). The unique identifier of the reference publication describing the model, specified either as a PubMed. Identifier (PMID), or as a DOI. The date when the model was last modified. Edelstein1996 - EPSP ACh event.
BioModels Database
http://www.ebi.ac.uk/biomodels-main
Skip to main content. Skip to local navigation. Skip to EBI global navigation menu. Skip to expanded EBI global navigation menu (includes all sub-sections). Gene Ontology categories ( new. Simulate in JWS ( ext. Models of the Month. Submit a new model. BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain. Models published in the literature.
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/annotationtips
BioModels Database Annotation Guidelines. This document contains a set of guidelines for the annotation of models, that is, to link model components with terms from controlled vocabularies and other data resources. This document has been designed with our curators in mind, please refer to our annotation information. Page for an introduction about model annotation. Selecting Adequate Accession Numbers. Such as CALM HUMAN, is not. BioModels Database follows the MIRIAM guidelines. Some of the entries give u...
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/annotation
BioModels Database Annotation Information. This document contains a general introduction to the annotation of models performed by the curators of BioModels Database. How to encode annotation? Annotation in the SBML model files provided by BioModels Database is encoded using the SBML controlled annotation scheme. Please refer to the SBML specifications. Specially the section entitled "A standard format for the annotation element") for more detailed information. This scheme makes use of MIRIAM URIs. Compos...
Projects - Chen Li
http://www.chenli.info/projects
Projects in the past. I was the main developer of BioModels Database. When I was working in Dr. Nicolas Le Novere's team. From 2005 to 2009. BioModels Database is a scientific resource for storing, simulating and analysing biological quantitative models of biochemical interests. All the models in BioModels Database have been described in the peer-reviewed scientific literature. Deposition of models upon publication is currently supported by Nature Publishing Group. BioModels.net initiative website: h...
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/curationtips
This document contains a set of guidelines for the curation phase of a model, that is, the analysis of the model itself and its correspondence to the publication. It is assumed that the models are already encoded in a syntactically correct form: 1) They are proper XML; 2) They comply to the SBML schema; 3) They passed the SBML consistency checks. Claim to base their model on the one by Huang and Ferrell (1996) [ BIOMD0000000009. Corresponding to RAF instead (personal communication). Check that the specie...
BioModels Database (Caltech mirror)
http://quantitative.caltech.edu/gotree
BioModels Database: GO tree. This is a tree view of the curated models based on their Gene Ontology. To browse the models, please click the. Icon on the left of the term to expand the related branch and similarly click on the. Icon to collapse an already opened branch. By clicking on a term's name, the list of models annotated with this term (or one of its descendant) will be displayed on the right panel.
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Welcome to BioModelKit!
Database for Modular Model Assembling and Mutation. Create your own user account to enjoy all our features. Store your favorite modules in collections, assemble modular-build models from your collections, store private module versions and do model muation based on meta data. Not a member yet? Database for Modular Model Assembling and Mutation. HGCN, Ensemble ID, GO ID, PMID.
BIOmodeling
7FP grant - SBMPs. COST grant - GLISTEN. PhD, MSc Projects. GLISTEN spring meeting in Porto, Portugal. 29-31.03.2017. Raquo;»». Allschwil(Basel)/Actelion Pharm. Ltd., Switzerland. April 1-2, 2015. Raquo;»». GLISTEN - GPCR-Ligand Interactions, Structures, and Transmembrane Signalling: a European Research Network,. 7-9 October 2013,. Raquo;»». The Modern Techniques for Drug Design Purposes,. 4-5 October 2011,. Raquo;»». The relationship of numerical simulations and experimental methods,. 26-28 May 2011,.
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BioModelos - Consulta y Validación de Modelos de Distribución de Especies en Colombia
Instituto de Investigación de Recursos Biológicos. Alexander von Humboldt Colombia. Programa de Evaluación y Monitoreo de la Biodiversidad. Aplicación de Consulta y Validación. De Modelos de Distribución de. Especies en Colombia ver más. Consulta las hipótesis de distribución disponibles por especie. Une tu conocimiento a la red de expertos. Mejora los modelos evaluando y editando las hipótesis de distribución. Intercambia información con expertos en tus grupos taxonómicos de interés. BioModelos parte de...
BioModels Database (Caltech mirror)
Skip to main content. Skip to local navigation. Skip to EBI global navigation menu. Skip to expanded EBI global navigation menu (includes all sub-sections). Simulate in JWS ( ext. Models of the Month. Submit a new model. BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain. More information about BioModels Database can be found in the FAQ.
Biomodels | Preclinical Research & Biopharmaceutical Contract Services
Skip to main content. Contract Research Services for Pre-Clinical. Cell and Molecular Biology. Tissue Collection/ Histology/ Immunohistochemistry. Innovation in Translational Rodent Models of Colitis. Immunological Methods to Enhance Translatability of Preclinical Models of Graft-vs.-Host Disease and Inflammatory Bowel Disease. Preclinical Models Designed for the Development of Treatment Strategies for Radiation-Induced Tissue Toxicities. Personalizing Supportive Care: Pharmacogenomics and Risk Prediction.
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Welcome to Biomodels Group page! - Biomodels Group
Welcome to Biomodels Group page! The Group of Molecular Genetic Systems Modeling is a scientific team of the Institute of Cytology and Genetics of the RAS actively involved in computer modeling and development of specialized software applications. The Group's members have developed an original generalized chemical-kinetic method. And generalized Hill function. The Group members have experience in the modeling of molecular-genetic processes involved in the regulation of E. coli metabolism. And other genet...
www.biomodern.com
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