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BiowebDB Consortium | Comparative genomics approaches

February 7, 2017. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that&#...

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BiowebDB Consortium | Comparative genomics approaches | biowebdb.org Reviews

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February 7, 2017. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that&#...

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BiowebDB Consortium | Comparative genomics approaches | biowebdb.org Reviews

https://biowebdb.org

February 7, 2017. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that&#...

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grid.biowebdb.org

BiowebDB Consortium | Comparative genomics approaches

February 7, 2017. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that&#...

wiki.biowebdb.org

BiowebDB Consortium | Comparative genomics approaches

February 7, 2017. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that&#...

services.biowebdb.org

Ruby on Rails: Welcome aboard

You’re riding Ruby on Rails! About your application’s environment. Here’s how to get rolling:. To create your models and controllers. To see all available options, run it without parameters. Set up a default route and remove or rename this file. Routes are set up in config/routes.rb. To create your database. If you're not using SQLite (the default), edit. With your username and password.

systemsbiology.biowebdb.org

Systems Biology and Computational Biology

Systems Biology and Computational Biology. Bioinformática Funcional e Evolutiva 2010. Biologia de Sistemas 2010. Biologia de Sistemas 2011. Biologia de Sistemas 2012. Biologia de Sistemas 2014. Seminários de Biologia Computacional e Sistemas. Análise e anotação funcional de dados NGS usando Stingray@Galaxy 08/2014. This entry was posted in Uncategorized. August 29, 2014. This entry was posted in Uncategorized. July 30, 2014. Análise e anotação funcional de dados NGS usando Stingray@Galaxy. Resumidamente ...

stingray.biowebdb.org

STINGRAY System

Version 2.0 Beta - Feb 17, 2009. Login / Email :. The System for Integrate Genomic Resources and Analyses (STINGRAY). Try STINGRAY during 24 hours. You may load 10 sequences. T rangeli Choachi (EST). T rangeli SC58 (EST). Dr Alberto Dávila (Coordenation). Glauber Wagner, MSc. (Manager). Pablo Nascimento Mendes, MSc. Margarita Ruiz, MSc. Kary Soriano, MSc. Dra Maria Luiza Machado Campos (Consulting). Dra Maria Cláudia R. Cavalcanti (Consulting). Dr Edmundo Carlos Grisard (Consulting). 2014, 7:132 [ URL ].

protozoadb.biowebdb.org

BiowebDB Consortium - ProtozoaDB - Development

E-value for hit against Homo sapiens. Comparative approaches involving the integrative use of heterogeneous databases, analyses tools, distributed computing and (re)annotation systems as well as sensitive similarity detection algorithms have been catalyzed by a variety of sequenced genomes. In this purpose, the BiowebDB Consortium, partially funded by CNPq, present the Protozoa Database. A integrated, user-friendly and flexible platform that contains the several protozoa genomes.

protogim.biowebdb.org

BiowebDB Consortium | Comparative genomics approaches

September 24, 2010. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that...

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basesdabioinformatica.blogspot.com

Bases da Bioinformática: Maio 2009

http://basesdabioinformatica.blogspot.com/2009_05_01_archive.html

Domingo, 31 de maio de 2009. 1 O que é Bioinformática? Do programa dedicado ao tema da Universidade de Wageningen, na Holanda - http: / www.bioinformatica.nl. Hoje, para que se possa ter idéia da contribuição que a informática trouxe ao desenvolvimento da genômica, um novo gene, com cerca de 12 mil bases pode ter sua seqüência decifrada em 1 minuto, quando há 3 anos atrás a mesma tarefa levaria 20 minutos e há 20 anos, mais ou menos 1 ano. 2 Um pouco de História. A história começa na década de 1940, quan...

basesdabioinformatica.blogspot.com

Bases da Bioinformática: 4. Como funciona?

http://basesdabioinformatica.blogspot.com/2009/05/3-como-funciona.html

Domingo, 31 de maio de 2009. Um genoma de bactéria tem em geral 3 ou 4 milhões de letrinhas ou bases. As máquinas sequenciadoras conseguem ler apenas pedaços de cerca de 1000 bases. A solução é gerar uma enorme quantidade de fragmentos que tenham sobreposição entre si. Para ler 3 ou 4 milhões são necessários cerca de 100 mil desses fragmentos. Aí, obviamente, é necessário um programa de computador para montar esse quebra cabeça. A linguagem dos genes. O PERL (Practical Extract and Report Language) é uma ...

basesdabioinformatica.blogspot.com

Bases da Bioinformática: 3.Para que serve?

http://basesdabioinformatica.blogspot.com/2009/05/para-que-serve.html

Domingo, 31 de maio de 2009. As principais aplicações da Bioinformática são as seguintes:. 1Análise, armazenamento, processamento de sequências biológicas (DNA/RNA, proteínas) em larga escala;. 2Organização e manuseamento de bases de dados biológicas;. 3Extracção de conhecimento útil a partir de sequências biológicas (Data Mining):anotação de genomas, identificação de genes, previsão da estrutura e da função de biomoléculas, etc. Fonte: Rocha,M. BIOINFORMÁTICA: passado, presente e futuro! USP: Programas ...

basesdabioinformatica.blogspot.com

Bases da Bioinformática: 2. Um pouco de História...

http://basesdabioinformatica.blogspot.com/2009/05/2-um-pouco-de-historia.html

Domingo, 31 de maio de 2009. 2 Um pouco de História. O nascimento do moderno computador digital e da moderna biologia molecular se deram mais ou menos ao mesmo tempo. A história começa na década de 1940, quando foi inventado o moderno computador digital. O primeiro computador moderno começou a funcionar por volta de 1946. Ele se chama digital, pois os dados são armazenados com um alfabeto binário, os. Mas esse nascimento ainda esperou algum tempo para acontecer. Foi preciso esperar até fins da década de ...

gusdb.org

GUS: The Genomics Unified Schema

http://www.gusdb.org/about.php

The Genomics Unified Schema. The Genomics Unified Schema (GUS) is an extensive relational database schema and associated application framework designed to store, integrate, analyze and present functional genomics data. The GUS schema supports a wide range of data types including genomics, gene expression, transcript assemblies, proteomics and others. It emphasizes standards-based ontologies and strong-typing. Projects and Groups Using GUS. A federated gateway to apicomplexan parasite genome resources loc...

basesdabioinformatica.blogspot.com

Bases da Bioinformática: 5.Atualidades

http://basesdabioinformatica.blogspot.com/2009/05/atualidades.html

Domingo, 31 de maio de 2009. Trechos do sequenciamento genético de amostra do vírus influenza A(H1N1),. Circulante no Brasil,sequenciado pelo Laboratório de Vírus Respiratórios. E Sarampo do Instituto Oswaldo Cruz (IOC/Fiocruz). O Brasil tem avançado muito no segmento. Da Bioinformática e ocupa o oitavo lugar em número de pesquisa com mapeamento genômico.Em novembro de 1999, a ciência brasileira fez história com o sequenciamento completo do DNA da bactéria. 2009)A EMBRAPA desenvolveu o Laboratório de Bio...

basesdabioinformatica.blogspot.com

Bases da Bioinformática: 1. O que é Bioinformática?

http://basesdabioinformatica.blogspot.com/2009/05/1-o-que-e-bioinformatica.html

Domingo, 31 de maio de 2009. 1 O que é Bioinformática? Do programa dedicado ao tema da Universidade de Wageningen, na Holanda - http: / www.bioinformatica.nl. Hoje, para que se possa ter idéia da contribuição que a informática trouxe ao desenvolvimento da genômica, um novo gene, com cerca de 12 mil bases pode ter sua seqüência decifrada em 1 minuto, quando há 3 anos atrás a mesma tarefa levaria 20 minutos e há 20 anos, mais ou menos 1 ano. Assinar: Postar comentários (Atom). 1 O que é Bioinformática?

maoringo.blogspot.com

Maorin Blog: 4月 2011

http://maoringo.blogspot.com/2011_04_01_archive.html

How very little can be done under the spirit of fear. 古く、糖鎖のDBはCarbBankがつくっていたが、１９９５年に廃止され、リンクできなくなってしまった。また、このDBは初期のDBだけあって、糖鎖の構造の書き方が不統一であったりして見にくかった。今回は糖鎖の構造を調べたかったのでKCF（KEGGの提供するデータの構造を中心としたファイル方式）を利用することにした。 CarbBankのファイル方式CCSD(Complex Carbohydrate Structure Database)はその点アノテーションは豊富なのである。と対応させようと思うと一（KCF)対多（CarbBank)になってしまっている。 Http:/ www.biowebdb.org/pub/kegg/ligand/glycan/. Http:/ ibisforest.org/index.php? イルミナ ChIP-Seq は、クロマチン免疫沈降（ChIP）と大量並列シーケンステクノロジーを併用して. Also known as ChIP-Seq.

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BiowebDB Consortium | Comparative genomics approaches

February 7, 2017. The BiowebDB consortium was created in 2003 and initially funded by CNPq in 2004. While it involves several Brazilian universities and research institutes, its multi-user “Comparative genomics” platform is physically hosted at the Oswaldo Cruz Institute, FIOCRUZ. Its portal and tools receive many visits. A month, mostly from Brazil, USA and some parts of Europe. At FIOCRUZ, BiowebDB is the official “Comparative Genomics” multi-user platform of the Oswaldo Cruz Institute. Blog for that&#...

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