omicsomics.blogspot.com
Omics! Omics!: September 2014
http://omicsomics.blogspot.com/2014_09_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, September 09, 2014. Reanalysis Lays Bare MinION Review's Spectacular Flaws. T and submit it to a journal. Links to this post. Friday, September 05, 2014. Oxford Takes Some Flak, Fires Back. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Reanalysis Lays Bare MinION Reviews Spectacular F. Oxford Takes Some Flak, Fires Back. About a...
omicsomics.blogspot.com
Omics! Omics!: February 2014
http://omicsomics.blogspot.com/2014_02_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Wednesday, February 26, 2014. NGS Saves A Young Life. Links to this post. Monday, February 24, 2014. A Sunset for Draft Genomes? Links to this post. Thursday, February 13, 2014. How will you deal with GRCh38? So, a significant advance, but a bit unpleasant one if you are in the space. You now have several ugly options before you with regard to your prior data m...
omicsomics.blogspot.com
Omics! Omics!: June 2015
http://omicsomics.blogspot.com/2015_06_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, June 30, 2015. June 2015: Busting Out All Over with Genomics Technology. 10X Genomics and a pair from Oxford Nanopore. Links to this post. Monday, June 08, 2015. BGI Unveils a Sequencing Factory to Go. When I was in George Churchs lab, he submitted a grant proposal (which, alas, was not funded) for a sequencing factory to generate one megabase. The Ion Tor...
omicsomics.blogspot.com
Omics! Omics!: Leaky clinical metagenomics pipelines are a very serious issue
http://omicsomics.blogspot.com/2015/07/leaky-clinical-metagenomics-pipelines.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Thursday, July 02, 2015. Leaky clinical metagenomics pipelines are a very serious issue. Update: Some significant issues with the tone of this post are discussed in a follow-up. The informatics methods used both in the case study and the paper in question were published as a separate paper in Genome Research. The other issue uncovered by Salzberg's group is also tr...
omicsomics.blogspot.com
Omics! Omics!: June 2015: Busting Out All Over with Genomics Technology
http://omicsomics.blogspot.com/2015/06/june-2015-busting-out-all-over-with.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, June 30, 2015. June 2015: Busting Out All Over with Genomics Technology. 10X Genomics and a pair from Oxford Nanopore. Mountain for these technologies to summit are very large polyploid genomes. PacBio has a nice write-up on their blog. In case you don't (as I don't) have access to the paper in Nature Genetics. But nothing of real substance. Another hazy e...
omicsomics.blogspot.com
Omics! Omics!: The genomic history of a breast cancer revealed
http://omicsomics.blogspot.com/2009/10/genomic-history-of-breast-cancer.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Wednesday, October 07, 2009. The genomic history of a breast cancer revealed. A supplementary item that could easily be its own paper. One final thought: the next year will probably be filled with a lot of similar papers. Cancer genomics is gearing up in a huge way. With Wash U alone planning 150 genomes. 809-813 : 10.1038/nature08489. Incidentally, my Google alert...
omicsomics.blogspot.com
Omics! Omics!: Clinical Metagenomics Pipelines: Revisiting & Reflecting
http://omicsomics.blogspot.com/2015/07/clinical-metagenomics-pipelines.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Friday, July 10, 2015. Clinical Metagenomics Pipelines: Revisiting and Reflecting. Last week's piece concerned an F1000 paper by Steven Salzberg and colleagues which reanalyzed a clinical metagenomics dataset and alleged two serious problems. The first claim was that the software used in the paper failed to detect potential bacterial pathogens in the samples...
omicsomics.blogspot.com
Omics! Omics!: March 2015
http://omicsomics.blogspot.com/2015_03_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, March 31, 2015. To Properly Assess Cancer Genomics, One Cannot Dismiss It. Through a happy series of professional events, I now get to have lunch very regularly with the author of the excellent blog The Curious Wavefunctio. A very expensive exercise in looking for keys under the lamppost, or something far more valuable? Links to this post. Some upstream st...
omicsomics.blogspot.com
Omics! Omics!: July 2015
http://omicsomics.blogspot.com/2015_07_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Friday, July 10, 2015. Clinical Metagenomics Pipelines: Revisiting and Reflecting. Links to this post. Thursday, July 02, 2015. Leaky clinical metagenomics pipelines are a very serious issue. Update: Some significant issues with the tone of this post are discussed in a follow-up. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Oxford Nanop...
