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BPS: Database of RNA Base-pair Structures

Database of RNA Base-pair Structures. BPS is a database of RNA base pairs with quantitative information on the spatial arrangements of interacting bases, including higher-order base associations, and the context of these interactions in high-resolution crystal structures. The structures are taken from the Nucleic Acid Database (NDB). And the base pairs are identified and characterized with the 3DNA. Higher-order base interactions refer to a hydrogen-bonding network made up of more than two nucleotides...

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BPS: Database of RNA Base-pair Structures | bps.rutgers.edu Reviews

<META> DESCRIPTION

Database of RNA Base-pair Structures. BPS is a database of RNA base pairs with quantitative information on the spatial arrangements of interacting bases, including higher-order base associations, and the context of these interactions in high-resolution crystal structures. The structures are taken from the Nucleic Acid Database (NDB). And the base pairs are identified and characterized with the 3DNA. Higher-order base interactions refer to a hydrogen-bonding network made up of more than two nucleotides&#4...

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1 atlas

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3 summary

4 base pair

5 higher order

6 isostere

7 saenger's pattern

8 base pairing pattern

9 structure id

10 structure class

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BPS: Database of RNA Base-pair Structures | bps.rutgers.edu Reviews

https://bps.rutgers.edu

Database of RNA Base-pair Structures. BPS is a database of RNA base pairs with quantitative information on the spatial arrangements of interacting bases, including higher-order base associations, and the context of these interactions in high-resolution crystal structures. The structures are taken from the Nucleic Acid Database (NDB). And the base pairs are identified and characterized with the 3DNA. Higher-order base interactions refer to a hydrogen-bonding network made up of more than two nucleotides&#4...

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x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://x3dna.org/about

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Middot; 3DNA C source code is available. Middot; DSSR is used in the URS DataBase. Middot; DSSR in the validation of NMR RNA structures. Middot; The DSSR - block-color option. Middot; Cartoon-block representation of quadruplex-duplex interface. Thanks for visiting the 3DNA website. With the support from a dedicated NIH. Grant, I’ve been able to set up a domain name for 3DNA (. V159-...

eternawiki.org

Online Databases - EteRNA WiKi

http://eternawiki.org/wiki/index.php5/Online_Databases

See List of Secondary Structure Databases. RCSB PDB (Protein Data Bank @ Research Collaboratory for Structural Bioinformatics). NDB (Nucleic acid DataBase). RNA CoSSMos (RNA Characterization of Secondary Structure Motifs). Allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops. SCOR (Structural Classification of RNA). Dead, probably definitely).

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bps.rutgers.edu

BPS: Database of RNA Base-pair Structures

Database of RNA Base-pair Structures. BPS is a database of RNA base pairs with quantitative information on the spatial arrangements of interacting bases, including higher-order base associations, and the context of these interactions in high-resolution crystal structures. The structures are taken from the Nucleic Acid Database (NDB). And the base pairs are identified and characterized with the 3DNA. Higher-order base interactions refer to a hydrogen-bonding network made up of more than two nucleotides&#4...

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