originally4.blogspot.com
Originally 4: Optimizing de novo RNA-seq: coordinating library insert length with read length
http://originally4.blogspot.com/2015/12/optimizing-de-novo-rna-seq-coordinating.html
Myths, thoughts and facts about genes and genomes of vertebrates (especially jawless fishes and cartilaginous fishes). Wednesday, December 2, 2015. Optimizing de novo RNA-seq: coordinating library insert length with read length. My lab recently published an article on RNA-seq library preparation and assessment of de novo. Transcriptome results. For this technical improvement, we used the Madagascar ground gecko (or ocelot gecko, Paroedura picta. Optimizing and benchmarking de novo. In our paper, we deriv...
monsterbashseq.wordpress.com
MMETSP re-assemblies | Lisa Johnson Cohen
https://monsterbashseq.wordpress.com/2016/09/13/mmetsp-re-assemblies
Notes on PhD research learning R, Python and Linux for bioinformatics and genomic-scale data analyses. Adventures with ONT MinION at MBL’s Microbial Diversity Course. DIB Lab Retreat to Yosemite, February 2017 →. September 13, 2016. Update (9/27/2016): 719 assemblies now available at the links below. All FINISHED! Update (9/22/2016): 715 assemblies now available at the links below. I have *almost* finished re-assembling. At UC Davis. The lab has developed the Eel pond khmer protocol. Let us know if you h...
korflab.ucdavis.edu
CEGMA
http://korflab.ucdavis.edu/Datasets/cegma
Unix and Perl Course. CEGMA HAS BEEN DISCONTINUED. We suggest you consider using alternative tools. Core eukaryotic genes dataset. Core eukarytotic genes in new species. May 18th 2015 - CEGMA is no longer being supported. Due to lack of resources we can no longer offer any support or feedback regarding CEGMA. We suggest that you try a new tool called BUSCO. Read this blog post. July 30th 2014 - New CEGMA VM available. For doing this. Here are the instructions for using our CEGMA VM. I've started a FAQ.
originally4.blogspot.com
Originally 4: December 2015
http://originally4.blogspot.com/2015_12_01_archive.html
Myths, thoughts and facts about genes and genomes of vertebrates (especially jawless fishes and cartilaginous fishes). Wednesday, December 2, 2015. Optimizing de novo RNA-seq: coordinating library insert length with read length. My lab recently published an article on RNA-seq library preparation and assessment of de novo. Transcriptome results. For this technical improvement, we used the Madagascar ground gecko (or ocelot gecko, Paroedura picta. Optimizing and benchmarking de novo. In our paper, we deriv...
