cafemol.org
CafeMolCafeMol is a general-purpose coarse- grained(CG) biomolecular modeling and simulation software.It can simulate proteins,nucleic acids,lipids and their mixture with various CG models.
http://www.cafemol.org/
CafeMol is a general-purpose coarse- grained(CG) biomolecular modeling and simulation software.It can simulate proteins,nucleic acids,lipids and their mixture with various CG models.
http://www.cafemol.org/
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CafeMol | cafemol.org Reviews
https://cafemol.org
CafeMol is a general-purpose coarse- grained(CG) biomolecular modeling and simulation software.It can simulate proteins,nucleic acids,lipids and their mixture with various CG models.
cafemol.org
CafeMol
http://www.cafemol.org/index.php
Coarse-grained biomolecular simulation software for proteins, nucleic acids, and membrane. CafeMol is a general-purpose coarse-grained(CG) biomolecular modeling and simulation software.It can simulate proteins,nucleic acids,lipids and their mixture with various CG models. We plan to release CafeMol version 3.0 near the end of August (. CafeMol 2.1 has been released. The manual has also been updated. We are glad to announce the release of CafeMol 2.0. We apologize for the one-month delay.).
CafeMol
http://www.cafemol.org/download.php
Coarse-grained biomolecular simulation software for proteins, nucleic acids, and membrane. How to obtain CafeMol. The CafeMol is available to anyone "as is" in the form of source codes. For obtaining CafeMol, please read the following license agreement, and enter your name and E-mail address. Any published work which utilizes CafeMol should include the citation " CafeMol. A coarse-grained biomolecular simulator for simulating proteins at work. H. Kenzaki, N. Koga, N. Hori, R. Kanada, ...Targz / 4.4MB).
CafeMol
http://www.cafemol.org/doc.php
Coarse-grained biomolecular simulation software for proteins, nucleic acids, and membrane. Manual for CafeMol 2.1. Manual for CafeMol 2.0. Manual for CafeMol 1.0. Kenzaki, H., Koga, N., Hori, N., Kanada, R., Li, WF., Okazaki, K., Yao, XQ., Takada, S. CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work. Journal of Chemical Theory and Computation. 2011) 7(6), pp 1979-1989.
CafeMol
http://www.cafemol.org/ack.php
Coarse-grained biomolecular simulation software for proteins, nucleic acids, and membrane. CafeMol is based on an earlier CG protein simulator CaFold developed for Go-model folding and functional simulation mostly coded by Nobuyasu Koga. CafeMol contains a set of IO utility subroutines, UTILKOTO, coded by Shigeru Obara.
CafeMol
http://www.cafemol.org/link.php
Coarse-grained biomolecular simulation software for proteins, nucleic acids, and membrane. The Development of the Next-Generation Supercomputer. Computational Science Research Program. Graduate School of Science.
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高田研究室 募集
http://theory.biophys.kyoto-u.ac.jp/recruit.php
Dept Biophysics, Div. Biol. Graduate School of Science. メール takada (at mark) biophys.kyoto-u.ac.jp. 高田研究室(http:/ theory.biophys.kyoto-u.ac.jp)では、生体分子のマルチスケールシミュレーション法の開発とそれによる高次生命現象の研究を実施しています。 給与は 350,000円/月以上 京都大学の規定に基づく。 応募書類は、履歴書、業績リスト、これまでの研究概要 A4 1枚程度 、意見を伺える方2名の氏名と連絡先を記載し、電子メールで送付ください。 メール takada (at mark) biophys.kyoto-u.ac.jp. Original design by G. Wolfgang. W3C XHTML 1.0. W3C CSS 2.0.
Takada Lab, download
http://theory.biophys.kyoto-u.ac.jp/download.php
Dept Biophysics, Div. Biol. Graduate School of Science. Protein folding of src SH3 domain by a Go model. A cooperative and reversible folding-unfolding trajectory of src SH3 domain simulated by a C-alpha Go model. (Koga and Takada JMB 2001). Download the movie ( 11MB). Protein folding of fibronectin type III by a Go model. A single folding event of fibronectin type III simulated by a C-alpha Go model. (Koga and Takada JMB 2001). Download the movie ( 9.6MB). Monte Carlo simulation for structure prediction.
高田研究室のメンバー
http://theory.biophys.kyoto-u.ac.jp/people.php
Dept Biophysics, Div. Biol. Graduate School of Science. Shoji Takada, Professor (高田 彰二 教授). Le Chang, PD (常 楽 博士研究員). Cheng Tan, PD (譚 丞 博士研究員). Teruko Suzuki, Secretary (鈴木 晃子 秘書). Mashiho Ito, D (伊藤 真志保). Mami Saito, D (齋藤 真美). Koji Ono, D (小野 晃司). Masahiro Shimizu, D (清水 将裕). Shintaro Kubo, M (久保 進太郎). Kazushi Mochizuki, M (望月 一志). Suguru Kato, M (加藤 傑). Toru Niina, M (新稲 亮). Manami Ikeda, B (池田 麻奈美). Hana Slevin, B (スレヴィン大浜 華). Yoshitomo Nakanishi, B (中西 良友). Yutaka Murata, B (村田 隆). W3C XHTML 1.0.
高田研究室の代表論文
http://theory.biophys.kyoto-u.ac.jp/publication_selected.php
Dept Biophysics, Div. Biol. Graduate School of Science. 前者の動き回る様子は、Terakawa et al JACS 2012で報告し 図の左 、後者の応答エレメントを見つける様子を本論文で報告しました 図の右。 H Kenzaki, N. Koga, N. Hori, R. Kanada, W. Li, K. Okazaki, X. Yao, and S. Takada , CafeMol: A coarse-grained biomolecular simulator for simulating proteins at work, J. Chem. Theory Comp., 7: 1979-1989, 2011. Okazaki et al 2006で提案した粗視化モデル 多谷モデルを拡張したシミュレーション技法で、誘導適合vs population-shiftの問題を調べたのがこの論文です。 これ、理由 種明かし を読むと、自然というか、もっと言えば当たり前というか、そんな印象を受けるかもしれません そんな感想を何回か聞きました。
高田研究室
http://theory.biophys.kyoto-u.ac.jp/index.php
Dept Biophysics, Div. Biol. Graduate School of Science. CafeMol ver 2.0公開. CafeMol ver 1.0公開. 教科書 タンパク質の立体構造入門 共同執筆 を出版しました。 Original design by G. Wolfgang. W3C XHTML 1.0. W3C CSS 2.0.
高田研究室 アクセス
http://theory.biophys.kyoto-u.ac.jp/access.php
Dept Biophysics, Div. Biol. Graduate School of Science. Mail: takada (at mark) biophys.kyoto-u.ac.jp. Kitashirakawa-Oiwakecho, Sakyo, Kyoto, 6068502. Dept Biophysics, Div Biology, Grad School Science, Kyoto University. Room: Science building 1, room 205. Mail: takada (at mark) biophys.kyoto-u.ac.jp. Original design by G. Wolfgang. W3C XHTML 1.0. W3C CSS 2.0.
高田研究室 論文リスト
http://theory.biophys.kyoto-u.ac.jp/publication.php
Dept Biophysics, Div. Biol. Graduate School of Science. Shoji Takada, Ryo Kanada, Cheng Tan, Tsuyoshi Terakawa, Wenfei Li, and Hiroo Kenzaki, Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations. Accounts of Chemical Research. 3026-3035 DOI: 10.1021/acs.accounts.5b00338, 2015 [Link]. Tsuyoshi Terakawa and Shoji Takada, p53 dynamics upon response element recognition explored by molecular simulations. 17107 doi:10.1038/srep17107, 2015 [Link]. 212404, 2015 [Link].
Software | UIT High-Performance Computing
http://hpc.unt.edu/software
Skip to main content. The following are codes that have been built and are maintained by the HPC Team. There is an RSS Feed available at https:/ hpc.unt.edu/softwareupdate. That will update anytime software is either added or updated on Talon2. If you would like to request a software program that is not listed below, please fill out our Software Request Form at https:/ hpc.unt.edu/software-requests. Filter by Research Area. Amber14 cuda-parallel, parallel, series. Tue, 2017-02-28 11:08. The Basic Local A...
Takada Lab
http://theory.biophys.kyoto-u.ac.jp/index_e.php
Dept Biophysics, Div. Biol. Graduate School of Science. Our goal is to understand diverse biological phenomena from physical aspect at molecular level. For the purpose, we are using theoretical and molecular simulation approaches. Open PostDoc positions (Unavailable). CafeMol ver 2.0 release. We finally release CafeMol version 2.0. CafeMol ver 1.0 release. We finally release CafeMol version 1.0. CafeMol is the coarse-grained biomolecular simulation software that we have been developing. Conformational ch...
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Café Moksa
In this blog I intend to comment on books and films. Saturday, January 13, 2007. This book by Anthony Stevens. Provides interesting information about dreams. The author also gives advice and explanations to help us better understand the world of dreams. He often does this by citing other authors. Citing Lowy, for example, he asks why assume and take for granted for granted that the world of dreams wants to be compared with, and related to, the world of reality and realistic thinking? In this book ( IS.
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cafemokum.nl
Welcome to the home of cafemokum.nl. To change this page, upload your website into the public html directory. Date Created: Wed Mar 15 15:45:21 2017.
Mokxa | Torréfacteur de cafés fins & Centre de Formation Barista
Torréfacteur de cafés fins Formation barista - brewing. Accessoires and Vente de Cafés Prestations événementielles. Torréfacteur de cafés fins. Centre de formation barista. Website made by Studio Avocadi.
Café Mokxa
Accéder au contenu principal. La boîte à Café. Préparation d’un café en filtre conique. CAFE MOKXA vous montre comment préparer un bon café en filtre conique. La fraîcheur du café est bien sur primordiale mais le sont également la mouture, le grammage, la température de l’eau et la manière de verser. Nous donnons quelques pistes de préparation dont vous pouvez bien sûr vous écartez en fonction de vos gouts. Votre palais est en effet le seul juge…. Histoires de cafés sur le café. Notre kit de voyage!
CafeMol
Coarse-grained biomolecular simulation software for proteins, nucleic acids, and membrane. CafeMol is a general-purpose coarse-grained(CG) biomolecular modeling and simulation software.It can simulate proteins,nucleic acids,lipids and their mixture with various CG models. CG to AA reconstruction tool for DNA (2017/09/06). We have a new tool to reconstruct atomistic structure from coarse-grained structure for DNA! Please download and try it! We are glad to announce the release of CafeMol 3.0!
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CafeMola.Org Ýçerik Listesi
CafeMola.Org Ana Sayfa. Forum yada bölüm görüntüle "Kurallar". Forum yada bölüm görüntüle "Duyurular". Forum yada bölüm görüntüle "Öneri and Þikayet". Forum yada bölüm görüntüle "Cafemola Radyo". Forum yada bölüm görüntüle "Yayýn Akýþý". Forum yada bölüm görüntüle "Radyo Ýstek Ve Önerileriniz". Forum yada bölüm görüntüle "Cafemola Fm". Forum yada bölüm görüntüle "Sohbet Bölümü". Forum yada bölüm görüntüle "Havadan Sudan ". Forum yada bölüm görüntüle "Yorum Meydaný". Forum yada bölüm görüntüle "Tartýþma".
Cafe Mola Kaş: Kahveler, Smoothiesler, Sıcak Soğuk İçecekler, Mantı, Gözleme, Menemen, Özel Kahvaltı Çeşitleri, Ev Yapımı Hamburger, Salatalar ve Sandviçler
Kaş'ta içtiğiniz, ve hatta her nerede olursa olsun içtiğiniz tüm Latte'leri unutun. Cafe Mola'nın özenle seçtiği kahvelerin, doğal süt ve profesyonel bir sunum ile buluşması, Cafe Latte'yı yeniden yaratıyor. En sağlıklı ve doğal et ürünlerinden birisi olan tavuğun, ızgara edilmiş hafif halinin, muhteşem mevsim yeşillikleri ile leziz buluşması. Tavuklu Salata, en leziz Mola Kafe spesyallerinden! Cafemiz 2012 Sezonuna Hazır! Yeni Web Sitemiz Yayında. Sevim and Birol ERSOY. Büyük şehirlerin soğuk kahve cafe...
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Café Molido | go joyfully in the direction of God's will
Go joyfully in the direction of God's will. October 4, 2012 by cafemolido. Once I was in love, quite veritably, I think, with a young man. But he never seemed to notice me. In the brief moments that we did speak, however, I always fancied there was something warm between us. There’s a part of me, I think, that will always love him. I wish that part would disappear. Kindness is on my mind tonight. July 5, 2012 by cafemolido. I doubt it. I hope not, at least. And by not loving ourselves, we also withhold l...
