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caportal.cis.jhu.edu

CAportal - Computational Anatomy portal

The Computational Anatomy Portal provides access to the Atlases. Developed at the Johns Hopkins University Center for Imaging Science. Links are also provided to Computational Anatomy Processing Portals. Atlases are generated using for anatomical structures from selected population groups. Atlases have been developed for subcortical structures in the human brain and the canine heart. The atlases are available for download at Atlases. Computational Anatomy Processing Portals. BIRN LDDMM Brain Portal.

http://caportal.cis.jhu.edu/

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CAportal - Computational Anatomy portal | caportal.cis.jhu.edu Reviews
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The Computational Anatomy Portal provides access to the Atlases. Developed at the Johns Hopkins University Center for Imaging Science. Links are also provided to Computational Anatomy Processing Portals. Atlases are generated using for anatomical structures from selected population groups. Atlases have been developed for subcortical structures in the human brain and the canine heart. The atlases are available for download at Atlases. Computational Anatomy Processing Portals. BIRN LDDMM Brain Portal.
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1 computational anatomy portal
2 brain
3 heart
4 overview
5 pipelines
6 projects
7 and tools
8 atlases
9 statistics
10 section
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CAportal - Computational Anatomy portal | caportal.cis.jhu.edu Reviews

https://caportal.cis.jhu.edu

The Computational Anatomy Portal provides access to the Atlases. Developed at the Johns Hopkins University Center for Imaging Science. Links are also provided to Computational Anatomy Processing Portals. Atlases are generated using for anatomical structures from selected population groups. Atlases have been developed for subcortical structures in the human brain and the canine heart. The atlases are available for download at Atlases. Computational Anatomy Processing Portals. BIRN LDDMM Brain Portal.

INTERNAL PAGES

caportal.cis.jhu.edu caportal.cis.jhu.edu
1

pipelines - Computational Anatomy portal

http://caportal.cis.jhu.edu/pipelines

Mutli-Structure Shape Analysis Pipeline. Hippocampus Surface Mapping Pipeline. Human Heart Shape Analysis Pipeline.

2

projects - Computational Anatomy portal

http://caportal.cis.jhu.edu/protocols

A description of the manual segmentation of the structures follows from the anatomical definitions (Wang et al., 2007, Qiu et al., 2010, Qiu et al., 2009) with the assistance of an atlas (Mai et al., 1997). Amygdala Subfield Segmentation at 7T. DJAMANAKOVA, A., FARIA, A. V., HSU, J., CERITOGLU, C., OISHI, K., MILLER, M. I., HILLIS, A. E. and MORI, S. 2013. Diffeomorphic brain mapping based on T1-weighted images: Improvement of registration accuracy by multi...FECZKO, E., AUGUSTINIACK J.C., FI...HONEYCUTT...

3

tools - Computational Anatomy portal

http://caportal.cis.jhu.edu/tools

4

pipelines/canine heart - Computational Anatomy portal

http://caportal.cis.jhu.edu/pipelines/canine_heart

Canine Heart Atlas Generation Information. J Ma, M. I. Miller, A. Trouve, L. Younes, "Beyesian Template Estimation in Computational Anatomy", Neuroimage, Submitted Y. Cao, M.I. Miller, R.L. Winslow and L. Younes. "Large Deformation Diffeomorphic Metric Mapping of Vector Fields", IEEE Transactions on Medical Imaging, Vol. 24, No. 9, 1216-1230, 2005.

5

atlases - Computational Anatomy portal

http://caportal.cis.jhu.edu/atlases

Download Human Subcortical Atlas. Download 11T Subcortical Structures. Download Canine Heart Atlas. Atlas volumes are provided in Analyze 7.5 format. Analyze. Is an image processing program, written by The Biomedical Imaging resource at the Mayo Foundation. The Analyze data format is used by a wide variety of software including lddmm-volume. The specification for Analyze 7.5 is available at Analyze 7.5 file format.

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LINKS TO THIS WEBSITE

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/staff

Em: timothy@cis.jhu.edu. Manager of Networking and Computer Systems. Em: akolasny@cis.jhu.edu. Em: erika@cis.jhu.edu. Em: chelsea@cis.jhu.edu,. Em: HLWheeler@jhu.edu,. Center for Imaging Science. 301 Clark Hall, 3400 N. Charles Street. Baltimore, MD 21218. Office: (410) 516-3826 Fax: (410) 516-4594. 2016 Johns Hopkins University. Visit the Department of Biomedical Engineering Website. Visit the Department of Electrical and Computer Engineering Website.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/alumni

Center for Imaging Science. 301 Clark Hall, 3400 N. Charles Street. Baltimore, MD 21218. Office: (410) 516-3826 Fax: (410) 516-4594. 2016 Johns Hopkins University. Visit the Department of Biomedical Engineering Website. Visit the Department of Electrical and Computer Engineering Website. Visit the Department of Applied Mathematics and Statistics Website.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/medical-imaging

Featured Research: Predicting CT dosimetry in children via whole body mappings. Large Deformation Diffeomorphic Co-Registration of reconstructed histological and MR volumes. Analysis of Diffusion Magnetic Resonance Images. Featured Research: High Throughput Neuroinformatics. Shape Analysis of Subcortical Structures in Autism and ADHD. Center for Imaging Science. 301 Clark Hall, 3400 N. Charles Street. Baltimore, MD 21218. Office: (410) 516-3826 Fax: (410) 516-4594. 2016 Johns Hopkins University.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/news

Center for Imaging Science. 301 Clark Hall, 3400 N. Charles Street. Baltimore, MD 21218. Office: (410) 516-3826 Fax: (410) 516-4594. 2016 Johns Hopkins University. Visit the Department of Biomedical Engineering Website. Visit the Department of Electrical and Computer Engineering Website. Visit the Department of Applied Mathematics and Statistics Website.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/collaborations/shapefrg.php

Shape Analysis Focus Research Group. This page describes the collaboration among members of the Focus Research Group (FRG) on "The geometry, mechanics and statistics of the infinite-dimensional manifold of shapes" sponsored by the Division of Mathematical Sciences (DMS) of the National Science Foundation (NSF). Laurent Younes (Principal Investigator, JHU). Michael Miller (co-PI, JHU). Tilak Ratnanather (co-PI, JHU). David Mumford (Principal Investigator, Brown). Peter Michor (Universitiet Wien, Austria).

icm.jhu.edu icm.jhu.edu

JHU – Institute for Computational Medicine | Portals

http://icm.jhu.edu/portals

Area of Concentration in CM. News & Events. News & Announcements. JHU - Institute for Computational Medicine. The Computational Anatomy Porta. L provides access to the Atlases, Pipelines, Projects and Tools developed at the Johns Hopkins University Center for Imaging Science. Links are also provided to the Computational Anatomy Processing Portals. The goal of the CardioVascular Research Grid. A full listing of tools developed with the support of the CVRG is available both below and on the CVRG website.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/statistical-learning

Featured Research: A 20,000 Question Game with Images and Videos. Manifold Learning and Clustering. Featured Research: The Language of Surgery. Center for Imaging Science. 301 Clark Hall, 3400 N. Charles Street. Baltimore, MD 21218. Office: (410) 516-3826 Fax: (410) 516-4594. 2016 Johns Hopkins University. Visit the Department of Biomedical Engineering Website. Visit the Department of Electrical and Computer Engineering Website. Visit the Department of Applied Mathematics and Statistics Website.

mri-resource.kennedykrieger.org mri-resource.kennedykrieger.org

Software - National Research Resource for Quantitative Functional MRI

http://www.mri-resource.kennedykrieger.org/software

One of our primary goals is to develop tools for analyzing and understanding medical images. In particular, we have developed software in the following areas:. Inter-Subject MRI Co-Registration and ROI Analysis: MRIStudio. DTI Processing and Utilities: MRIStudio and CATNAP. CEST Z-spectra: Online Simulations. CEST Data Processing Tools. Functional Anatomy: CAPortal, LDDMM Suite, CIS Software. Imaging Informatics: XNAT in CA Works. MRS Analysis: CSX, IMAX, DSX, Gannet. Note: When downloading and installing.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/posters

Patient Specific Dosimetry Phantoms Using Multi-Channel LDDMM of the Whole Body. Region of Interest Shape Analysis using Computational Anatomy Works. Matching Sparse Sets of Cardiac Image Cross-sections Using Large Deformation Diffeomorphic Metric Mapping Algorithm. Computational Anatomy Works (CAWorks): Enhancing Paraview for Medical Imaging. Large Deformation Diffeomorphic Metric Mapping Registration of in-vivo MR Images and Reconstructed 3D Images of Histological Sections. Center for Imaging Science.

cis.jhu.edu cis.jhu.edu

The Center for Imaging Science

http://cis.jhu.edu/education/graduate-curriculum.php

Sample Graduate Curriculum at CIS. CIS has created recommended tracks of courses for students interested in pursuing a degree in Applied Mathematics and Statistics, Biomedical Engineering, Computer Science, or Electrical and Computer Engineering. The following tracks have been devised for a 4-5 year Ph.D program through the Center for Imaging Science. Masters Students, for example, might choose from year 1 and 2 courses. Please consult with your faculty advisor for more information. See the AMS website.

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CAportal - Computational Anatomy portal

The Computational Anatomy Portal provides access to the Atlases. Developed at the Johns Hopkins University Center for Imaging Science. Links are also provided to Computational Anatomy Processing Portals. Atlases are generated using for anatomical structures from selected population groups. Atlases have been developed for subcortical structures in the human brain and the canine heart. The atlases are available for download at Atlases. Computational Anatomy Processing Portals. BIRN LDDMM Brain Portal.

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