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The Semantic Web in Life Sciences research

Saturday, August 13, 2011. I have just started off a new blog " Ontological definitions and such. Given I have decided to use this "The Semantic Web in Life Sciences research" blog for just um, talking about life science research. Thursday, July 7, 2011. Sensors and algorithms as Web services. I'm now looking at bringing more Semantic Web applications to life; this time with an emphasis on sensors and processing algorithms for visualization and classification. Friday, March 26, 2010. Etc) would be concep...

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The Semantic Web in Life Sciences research | cartiksplace.blogspot.com Reviews
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Saturday, August 13, 2011. I have just started off a new blog Ontological definitions and such. Given I have decided to use this The Semantic Web in Life Sciences research blog for just um, talking about life science research. Thursday, July 7, 2011. Sensors and algorithms as Web services. I'm now looking at bringing more Semantic Web applications to life; this time with an emphasis on sensors and processing algorithms for visualization and classification. Friday, March 26, 2010. Etc) would be concep...
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The Semantic Web in Life Sciences research | cartiksplace.blogspot.com Reviews

https://cartiksplace.blogspot.com

Saturday, August 13, 2011. I have just started off a new blog " Ontological definitions and such. Given I have decided to use this "The Semantic Web in Life Sciences research" blog for just um, talking about life science research. Thursday, July 7, 2011. Sensors and algorithms as Web services. I'm now looking at bringing more Semantic Web applications to life; this time with an emphasis on sensors and processing algorithms for visualization and classification. Friday, March 26, 2010. Etc) would be concep...

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1

The Semantic Web in Life Sciences research: June 2007

http://cartiksplace.blogspot.com/2007_06_01_archive.html

Thursday, June 28, 2007. The battle for LSIDs and the obsession with browsers. I've been actively following the debate over resolvable URLs in the Health Care and Life Sciences (HCLS) on the Semantic Web community. At the workshop in Banff as part of the WWW 2007 conference. Some leading thinkers in the community actually questioned the utility of resolvable URLs. Shocking! Non resolving namespaces are the bane of semantic interoperability. DIE, example.org, DIE! On a conventional browser, users were req...

2

The Semantic Web in Life Sciences research: October 2007

http://cartiksplace.blogspot.com/2007_10_01_archive.html

Tuesday, October 2, 2007. So you think you know ontologies? The need to share biological data has led to the development of several high profile and oft referenced ontologies in the life sciences domain. Soldatova and King. Today, the word "ontology". With spares, not describing. Subscribe to: Posts (Atom). The Semantic Web in Life Sciences research. So you think you know ontologies? View my complete profile.

3

The Semantic Web in Life Sciences research: November 2009

http://cartiksplace.blogspot.com/2009_11_01_archive.html

Saturday, November 14, 2009. Biological data integration with Phenoscape. It has been quite a long time since my last post in June 2008. I have since taken up a position working on an NSF funded project in Durham, NC. Phenoscape. Developed by my colleague, Jim Balhoff. By ontology based semantics, I mean semantics defined in OBO. The schema of the Phenoscape knowledgebase is based upon the Ontology-Based Database. OBD) schema developed by Chris Mungall. At the Lawrence Berkeley National Laboratory for st...

4

The Semantic Web in Life Sciences research: Modeling the Linnaean taxonomy in OWL: Where do specimens come in?

http://cartiksplace.blogspot.com/2010/03/modeling-linnaean-taxonomy-in-owl-where.html

Friday, March 26, 2010. Modeling the Linnaean taxonomy in OWL: Where do specimens come in? In my earlier post, I had written about one way of modeling a Linnaean taxonomy in OWL, where the names of species, genera, class, and order could be modeled as instances of concepts from the taxonomic rank ontology. For example, Homo sapiens. Is modeled as an instance of the Species concept from the Taxonomy Rank ontology. Last week, I was at the Phenoscape project all-hands meeting at the Field Museum. Given the ...

5

The Semantic Web in Life Sciences research: Introducing the Pubmed Annotator

http://cartiksplace.blogspot.com/2008/05/introducing-pubmed-annotator.html

Friday, May 23, 2008. Introducing the Pubmed Annotator. In my last post, I held forth on the divide between biologists and computer scientists. Since then, I have been actively collaborating with biologists trying to harness their knowledge of biomedical experiments through an annotation interface that is called the Pubmed Annotator. The Pubmed Annotator is at an alpha state of development. At present, I'm addressing some advanced security issues brought up by Ed. And Luke, two of the Wilkinson lab's.

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Ontological definitions and such. I'm passionate about ontologies. There's nothing I like to do better than to open up a simple text editor, TextEdit or Notepad, take your pick and type RDF/XML syntax for OWL. Here I talk about my experiences in ontology and ontology based application development. WARNING: Contents may be unfit for non-supergeek consumption. Sunday, December 4, 2011. Filling a gap in my academic experience. From the ECE Department. Where I'm research faculty) and Jake Chen. For any of th...

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The Semantic Web in Life Sciences research

Saturday, August 13, 2011. I have just started off a new blog " Ontological definitions and such. Given I have decided to use this "The Semantic Web in Life Sciences research" blog for just um, talking about life science research. Thursday, July 7, 2011. Sensors and algorithms as Web services. I'm now looking at bringing more Semantic Web applications to life; this time with an emphasis on sensors and processing algorithms for visualization and classification. Friday, March 26, 2010. Etc) would be concep...

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