cattletickbase.ccgapps.com.au

CCG Organism Portal

CattleTickBase - Rhipicephalus microplus. Browse Genome Annotations GBrowse. Select a BAC sequence to view in GBrowse. Select a BmiGI Cot extended transcript to view in GBrowse. View gene annotations for larval transcript library. View gene annotations for tick gut transcript library. Go back to organism portal. Create your own bioinformatics pipelines to analyse data - YABI. Browse Genome sequence and add your own tracks - GBrowse. Blast your data against our data sets. Link to download cattle tick data.

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CCG Organism Portal | cattletickbase.ccgapps.com.au Reviews

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CattleTickBase - Rhipicephalus microplus. Browse Genome Annotations GBrowse. Select a BAC sequence to view in GBrowse. Select a BmiGI Cot extended transcript to view in GBrowse. View gene annotations for larval transcript library. View gene annotations for tick gut transcript library. Go back to organism portal. Create your own bioinformatics pipelines to analyse data - YABI. Browse Genome sequence and add your own tracks - GBrowse. Blast your data against our data sets. Link to download cattle tick data.

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CCG Organism Portal | cattletickbase.ccgapps.com.au Reviews

https://cattletickbase.ccgapps.com.au

CattleTickBase - Rhipicephalus microplus. Browse Genome Annotations GBrowse. Select a BAC sequence to view in GBrowse. Select a BmiGI Cot extended transcript to view in GBrowse. View gene annotations for larval transcript library. View gene annotations for tick gut transcript library. Go back to organism portal. Create your own bioinformatics pipelines to analyse data - YABI. Browse Genome sequence and add your own tracks - GBrowse. Blast your data against our data sets. Link to download cattle tick data.

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cattletickbase.ccgapps.com.au

1

CCG Organism Portal

http://cattletickbase.ccgapps.com.au/organism/rhipicephalus/cot_extended_bmigi.html

Go back to Organism Portal. Similar to UniRef100 A5FHK7 Cluster: TonB-dependent siderophore receptor precursor; n=1; Flavobacterium johnsoniae UW101 Rep:, partial (1%)". Weakly similar to UniRef100 Q9NGA7 Cluster: Singed protein; n=4; melanogaster subgroup Rep: Singed protein - Drosophila yakuba (Fruit fly), partial (60%)". Similar to UniRef100 A1L3J7 Cluster: LOC100037025 protein; n=1; Xenopus laevis Rep: LOC100037025 protein - Xenopus laevis, partial (1%)". Similar to UniRef100 Q6YRK9 Cluster: Membrane...

2

CCG Organism Portal

http://cattletickbase.ccgapps.com.au/organism/rhipicephalus/bac_gene_list.html

Go back to Organism Portal. PREDICTED: LReO 3-like [Danio rerio]. RNA-directed RNA polymerase, putative [Ixodes scapularis] ". Hypothetical protein GIP L1 00580 [Glyptapanteles indiensis]. Hypothetical protein IscW ISCW002319 [Ixodes scapularis]. Hypothetical protein TcasGA2 TC006847 [Tribolium castaneum]. ORF MSV061 putative LINE reverse transcriptase, similar to Caenorhabditis elegans GB:U00063 [Melanoplus sanguinipes entomopoxvirus] ". PREDICTED: similar to pol-like protein [Nasonia vitripennis].

3

rmi_fruslarvae_transcriptome.fa

http://cattletickbase.ccgapps.com.au/organism/rhipicephalus/frustrated_larvae_autofact/rmi_fruslarvae_transcriptome.fa.html

Automatic annotation results for rmi fruslarvae transcriptome.fa. Signal recognition particle receptor alpha subunit (sr-alpha). Signal recognition particle receptor alpha subunit (Sr-alpha) n=1 Tax=Aedes aegypti RepID=Q178J5 AEDAE. Intracellular trafficking, secretion, and vesicular transport. Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RND0 NEMVE. GO:0005515 protein binding IEA. PREDICTED: similar to Cyclin H CG7405-PA n=1 Tax=Apis mellifera RepID=UPI000051A3A5. Eukaryotic translation init...

4

CCG Organism Portal

http://cattletickbase.ccgapps.com.au/organism/rhipicephalus/data.html

Go back to Organism Portal. Total number of bases. Moolhuijzen et al 2010. Rmi bac ends.fa. Cot DNA, X3 experiments. 1,798,400,445. Guerrero et al 2010, Moolhuijzen et al 2010. Cot DNA, Version 2. Bellgard et al 2010. Guerrero et al 2010. Australian Tick Gut (S1) transcriptome. FASTA, Contig (300 bp). Barrero et al 2010. S1 tick curated transcriptome mod.txt. Australian Tick Larvae (S2) transcriptome. FASTA Contig (300 bp). Barrero et al 2010. S2 tick curated transcriptome mod.txt. 12 Affymetrix, samples.

5

rmi_gut_transcriptome.fa

http://cattletickbase.ccgapps.com.au/organism/rhipicephalus/gut_autofact/rmi_gut_transcriptome.fa.html

Automatic annotation results for rmi gut transcriptome.fa. PREDICTED: dimethylglycine dehydrogenase n=1 Tax=Oryctolagus cuniculus RepID=UPI0001CE17BE. Glycine, serine and threonine metabolism Metabolic pathways. PREDICTED: similar to CG17509-PA n=1 Tax=Apis mellifera RepID=UPI000051A55B. Tyrosine kinase, putative n=1 Tax=Ixodes scapularis RepID=B7PB17 IXOSC. F-box and WD domain protein, putative n=1 Tax=Ixodes scapularis RepID=B7PUS1 IXOSC. GO:0004672 protein kinase activity IEA; GO:0004674 protein serin...

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CattleTickBase - Rhipicephalus microplus. Browse Genome Annotations GBrowse. Select a BAC sequence to view in GBrowse. Select a BmiGI Cot extended transcript to view in GBrowse. View gene annotations for larval transcript library. View gene annotations for tick gut transcript library. Go back to organism portal. Create your own bioinformatics pipelines to analyse data - YABI. Browse Genome sequence and add your own tracks - GBrowse. Blast your data against our data sets. Link to download cattle tick data.

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