proteomescout.wustl.edu
ProteomeScout Statistics
https://proteomescout.wustl.edu/statistics
Modifications by Residue (Top 5). Modifications by Type (Top 5). Modifications by Species (Top 5). Modifications Reported among Compendia. Novel Modifications Reported in Experiments. Modified Sites By Grouping. By Modification Type (Top 50). By Species (Top 50). Saccharomyces cerevisiae (strain ATCC 204508 / S288c). Schizosaccharomyces pombe (strain 972 / ATCC 24843). Candida albicans (strain SC5314 / ATCC MYA-2876). Mycoplasma pneumoniae (strain ATCC 29342 / M129). Human cytomegalovirus (strain AD169).
proteomescout.wustl.edu
Home - Experiments
https://proteomescout.wustl.edu/experiments
HPRD: Human Protein Reference Database Curated Modifications. July 2010 download of HPRD's modification table. Keshava Prasad TS,Goel R,Kandasamy K,Keerthikumar S,Kumar S,Mathivanan S,Telikicherla D,Raju R,Shafreen B,Venugopal A,Balakrishnan L,Marimuthu A,Banerjee S,Somanathan DS,Sebastian A,Rani S,Ray S,Harrys Kishore CJ,Kanth S,Ahmed M,Kashyap MK,Mohmood R,Ramachandra YL,Krishna V,Rahiman BA,Mohan S,Ranganathan P,Ramabadran S,Chaerkady R,Pandey A. Gupta R,Birch H,Rapacki K,Brunak S,Hansen JE. DbPTM 3&#...
proteomescout.wustl.edu
Experiment Summary: [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
https://proteomescout.wustl.edu/experiments/1386/summary
Experiment Summary: [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Wolf-Yadlin A,Hautaniemi S,Lauffenburger DA,White FM. Proceedings of the National Academy of Scienc. 2007-April. Vol 104. 5860-5. [pubmed]. Https:/ proteomescout.wustl.edu/webservice.
proteomescout.wustl.edu
About ProteomeScout
https://proteomescout.wustl.edu/about
Please cite the following publication when publishing results derived from use of ProteomeScout:. Matlock MK, Holehouse AS, Naegle KM. ProteomeScout: A web resource for analysis of high-throughput post-translational proteomic studies. Nucleic Acids Research, 2015. Please cite the following publication when publishing results derived from use of MCAM:. PLoS Comput Biol 7(7), 2011. Reporting Issues and Feature Requests. Please use the ProteomeScout issue tracker service located here. Cookies are used on th...
proteomescout.wustl.edu
Protein Search
https://proteomescout.wustl.edu/proteins
Https:/ proteomescout.wustl.edu/webservice. Https:/ proteomescout.wustl.edu/static/css/graphs.css. Report Issues and Requests. Created by The Naegle Lab. In The Center for Biological Systems Engineering. At Washington University in St. Louis. Is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
pappulab.wustl.edu
Pappu Lab
http://pappulab.wustl.edu/CIDERinfo.html
PUBLIC-BETA (OPEN), version 1.5. Please click here to be taken to the current BETA version. This is a public beta version, meaning we're taking (and would appreciate! Feedback. Please let us know of any bugs, issues, or feature requests via this form. CIDER was developed by Alex Holehouse, based on code written by James Ahad. For any questions please contact Alex at alex.holehouse@wustl.edu. A manuscript is in preparation, but for now please cite as;. Rohit Pappu (content and images).
pappulab.wustl.edu
Pappu Lab
http://pappulab.wustl.edu/joining.html
Given the interdisciplinary nature of the lab's work, individuals from a wide range of backgrounds (both computational and experimental) may be suitable candidates to join the lab. Interested in working with Dr. Pappu are welcome to contact him or lab members directly, but should apply through one of the relevant PhD programs at Washington University in Saint Louis. The lab has had students from Physics. Computational and Systems Biology. And Computational and Molecular Biophysics.
pappulab.wustl.edu
Pappu Lab
http://pappulab.wustl.edu/localCIDER.html
Current version 0.1.8 [Released March 2016]. Is a Python package for carrying out a range of calculations on disordered protein sequences. It allows users to carry out high-throughput calculations on large datasets using their own infrastructure, as well as create programatic pipeline. localCIDER runs on linux, OSX, and windows. Please see our GitHub hosted documentation here. This includes tutorials and installation instructions. A manuscript is in preparation, but for now please cite as;.
pappulab.wustl.edu
Pappu Lab
http://pappulab.wustl.edu/tools.html
We use multiple biophysical tools to facilitate our research. These include. Adaptation and application of theories from polymer physics. And the physics of phase transitions. Molecular and mesoscopic simulations based on custom homegrown software. And novel Monte Carlo algorithms. As well as traditional molecular dynamics. Small and large ensemble fluorescence spectroscopies. With experimentalists within and beyond Washington University. Rohit Pappu (content and images).
pappulab.wustl.edu
Pappu Lab
http://pappulab.wustl.edu/publications.html
T S Harmon, M.D. Crabtree, S.L. Shammas, A.E. Posey, J. Clarke, R.V. Pappu. 2016) GADIS: Algorithm for Designing Sequences to Achieve Target Secondary Structure Profiles of Intrinsically Disordered Proteins. Protein Engineering, Design, and Selection 2016. CW Pak, M. Kosno, A.S. Holehouse, S.B. Padrick, A. Mittal, R. Ali, A.A. Yunus, D.R. Liu, R.V. Pappu*, M.K. Rosen*. 2016) Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Model Disordered Protein. Molecular Cell.
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