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Welcome | Computational Systems Biology - Centre of Excellence

Computational Systems Biology is an ARC Centre of Excellence

http://www.ce4csb.org/

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CONTACTS AT CE4CSB.ORG

University of Western Australia

Computational Systems Biology

Computatio●●●●●●●●●●ms Biology

Cr●●ey , WA, 6009

AU

61.8●●●●4466
ia●●●●●●●●●●●@uwa.edu.au

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University of Western Australia

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Computatio●●●●●●●●●●ms Biology

Cr●●ey , WA, 6009

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University of Western Australia

Ian Castleden

Computatio●●●●●●●●●●ms Biology

Cr●●ey , WA, 6009

AU

61.8●●●●4466
ia●●●●●●●●●●●@uwa.edu.au

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PAGE TITLE
Welcome | Computational Systems Biology - Centre of Excellence | ce4csb.org Reviews
<META>
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Computational Systems Biology is an ARC Centre of Excellence
<META>
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1 Computational Systems Biology
2 Biology
3 University
4 Ian Small
5 Plant Energy Biology
6 Metabolomics
7 Australia
8 Arabidopsis thaliana
9 Centre of Excellence
10 Science
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computational systems biology,centre of excellence,about us,people,downloads,publications,news,links,new science paper,cracking the code,see plos,more news,software,annoj,idalign,metalign,mz2mgf,mzcombinator,atmatch,ratiodiff,web equations,gene ontology
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Welcome | Computational Systems Biology - Centre of Excellence | ce4csb.org Reviews

https://ce4csb.org

Computational Systems Biology is an ARC Centre of Excellence

INTERNAL PAGES

ce4csb.org ce4csb.org
1

software | Computational Systems Biology - Centre of Excellence

http://www.ce4csb.org/software.shtml

Artwork: Scot Nicholls Look inside the paper. Our scientists have cracked a code underlying recognition of RNA molecules by a superfamily of RNA-binding proteins called penta-tricopeptide repeat (PPR) proteins. This opens the way to destroying or correcting defective gene products, such as those that cause genetic disorders in humans. PhD Student Michael Vacher describes his work. Congratulations for Conny Hooper at CBSM. Downloads/Software/Databases available at this centre. Was choking on our 1.5Gb...

2

Welcome | Computational Systems Biology - Centre of Excellence

http://www.ce4csb.org/applications/ratiodiff

An error occurred while processing this directive]. The Significance of the Difference Between Two Independent Proportions. RatioDiff computes the same p-values as this stats page. Just Drag and drop your Excel spreadsheet file onto the logo. Two extra sheets will be inserted "z-values" and "p-values". You can also install this applet as a fully functioning program on your desktop. Look for the logo on your desktop). Users the applet will -can only! Write the updated file to your. Directory. (and the.

3

networks | Computational Systems Biology - Centre of Excellence

http://www.ce4csb.org/networks.html

Artwork: Scot Nicholls Look inside the paper. Our scientists have cracked a code underlying recognition of RNA molecules by a superfamily of RNA-binding proteins called penta-tricopeptide repeat (PPR) proteins. This opens the way to destroying or correcting defective gene products, such as those that cause genetic disorders in humans. PhD Student Michael Vacher describes his work. Congratulations for Conny Hooper at CBSM. Toward an in-silico plant. Michael Vacher PhD Student.

4

staff | Computational Systems Biology - Centre of Excellence

http://www.ce4csb.org/staff.shtml

Artwork: Scot Nicholls Look inside the paper. Our scientists have cracked a code underlying recognition of RNA molecules by a superfamily of RNA-binding proteins called penta-tricopeptide repeat (PPR) proteins. This opens the way to destroying or correcting defective gene products, such as those that cause genetic disorders in humans. PhD Student Michael Vacher describes his work. Congratulations for Conny Hooper at CBSM. PhD, Edinburgh University, UK. Email: ian.small[at]uwa.edu.au. Laura M. Boykin.

5

aboutus | Computational Systems Biology - Centre of Excellence

http://www.ce4csb.org/aboutus.shtml

Artwork: Scot Nicholls Look inside the paper. Our scientists have cracked a code underlying recognition of RNA molecules by a superfamily of RNA-binding proteins called penta-tricopeptide repeat (PPR) proteins. This opens the way to destroying or correcting defective gene products, such as those that cause genetic disorders in humans. PhD Student Michael Vacher describes his work. Congratulations for Conny Hooper at CBSM. In 2007 the Centre of Excellence in Computational Systems Biology. Proteins http:/ ...

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plantenergy.uwa.edu.au plantenergy.uwa.edu.au

PEB::Joint Initiatives

http://plantenergy.uwa.edu.au/aboutus/joint-init.shtml

CABiN : UWA Centre for Comparative Analysis of Biomolecular Networks (CABiN). Wwwcabin.uwa.edu.au. Wwwciber.science.uwa.edu.au. Established by Ryan Lister, the long-term goals of our research are to understand how the information encoded in the DNA of plant and animal genomes is controlled by epigenetic mechanisms, how the epigenome is altered by the surrounding environment, and to develop molecular tools for precision epigenome engineering. X21E7; Back to top. X273F; Design by CPEB. For enquiries about ...

millar3.biochem.uwa.edu.au millar3.biochem.uwa.edu.au

PEB::Joint Initiatives

http://millar3.biochem.uwa.edu.au/aboutus/joint-init.shtml

CABiN : UWA Centre for Comparative Analysis of Biomolecular Networks (CABiN). Wwwcabin.uwa.edu.au. Wwwciber.science.uwa.edu.au. Established by Ryan Lister, the long-term goals of our research are to understand how the information encoded in the DNA of plant and animal genomes is controlled by epigenetic mechanisms, how the epigenome is altered by the surrounding environment, and to develop molecular tools for precision epigenome engineering. X21E7; Back to top. X273F; Design by CPEB. For enquiries about ...

listerlab.org listerlab.org

Lister Lab - The University of Western Australia

http://www.listerlab.org/people.html

Genetic and epigenomic variation in clonal plants. DNA methylation dynamics in the plant genome. Stem cell epigenomics, epigenome manipulation. Developing gene regulatory circuits for controlling gene expression in plants. Forrest Research Foundation PhD scholar. Genome and epigenome dynamics in brain, bioinformatics. Evolution of DNA methylation systems. Forrest Research Foundation PhD Scholar. Cell type resolution plant epigenomics. Control of DNA methylation patterns in the plant genome.

plantenergy.edu.au plantenergy.edu.au

PEB::Joint Initiatives

http://www.plantenergy.edu.au/aboutus/joint-init.shtml

CABiN : UWA Centre for Comparative Analysis of Biomolecular Networks (CABiN). Wwwcabin.uwa.edu.au. Wwwciber.science.uwa.edu.au. Established by Ryan Lister, the long-term goals of our research are to understand how the information encoded in the DNA of plant and animal genomes is controlled by epigenetic mechanisms, how the epigenome is altered by the surrounding environment, and to develop molecular tools for precision epigenome engineering. X21E7; Back to top. X273F; Design by CPEB. For enquiries about ...

listerlab.org listerlab.org

Lister Lab - The University of Western Australia

http://www.listerlab.org/links.html

AMATA - The Australasian Genomic Technologies Association. NIH Roadmap Epigenomics Project. ARC CoE Plant Energy Biology. Computational Systems Biology CoE. The Centre for Integrative Bee Research. The University of Western Australia. School of Chemistry and Biochemistry. ARC CoE Plant Energy Biology. Computational Systems Biology CoE. The Centre for Integrative Bee Research. The University of Western Australia. School of Chemistry and Biochemistry. Ph: 61 8 6488 4407. The University of Western Australia.

listerlab.org listerlab.org

Lister Lab - The University of Western Australia

http://www.listerlab.org/join.html

I'm looking for motivated post-docs, PhD students, Honours and undergraduate students to join my lab to conduct research into fundamental questions in epigenetics and genomics. We rely heavily on new DNA sequencing technologies, molecular and genetic tools, and advanced computational analysis large-scale datasets, so interests and experience in bioinformatics, programming, statistical analyses, molecular biology, biochemistry, genomics, or related fields will be highly applicable to our research acti...

listerlab.org listerlab.org

Lister Lab - The University of Western Australia

http://www.listerlab.org/publications.html

Eichten SR, Stuart T, Srivastava A, Lister R, Borevitz JO (2016, Feb) DNA Methylation profiles of diverse Brachypodium distachyon aligns with underlying genetic diversity. Stuart T, Eichten SR, Cahn J, Borevitz JO, Lister R (2016, Feb) Population scale mapping of transposable element diversity uncovers novel genetic diversity linked to gene regulation and epigenomic variation. Doi:10.1038/nplants.2016.58. journal. 107554/eLife.11613. journal. 101038/ng.3522. journal. Hontelez S, van Kruijsbergen I, Georg...

listerlab.org listerlab.org

Lister Lab - The University of Western Australia

http://www.listerlab.org/browsers.html

AnnoJ epigenome data browsers and downloads. Human brain DNA methylomes. Mouse brain DNA methylomes. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis. The human DNA methylome. Human DNA methylomes at base resolution show widespread epigenomic differences. Human iPS cell epigenomes. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. ARC CoE Plant Energy Biology. Computational Systems Biology CoE. The Centre for Integrative Bee Research.

listerlab.org listerlab.org

Lister Lab - The University of Western Australia

http://www.listerlab.org/science.html

Research in the Lister Lab. During development, discrete patterns of gene expression are established in different cell types that engender distinctive functionality, and these patterns are inherited by daughter cells without any changes to the genomic DNA sequence. But where does the information reside that enables this stable transmission of states of transcriptional activity? What is the role of DNA methylation in neural development, function, and disorders? Reading the DNA methylome. An unbiased bioch...

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Welcome | Computational Systems Biology - Centre of Excellence

Artwork: Scot Nicholls Look inside the paper. Our scientists have cracked a code underlying recognition of RNA molecules by a superfamily of RNA-binding proteins called penta-tricopeptide repeat (PPR) proteins. This opens the way to destroying or correcting defective gene products, such as those that cause genetic disorders in humans. PhD Student Michael Vacher describes his work. Congratulations for Conny Hooper at CBSM. Centre of Excellence at The University of Western Australia.

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