cellml.org

The CellML project — CellML

The CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different modelling tools. It also enables them to reuse components from one model in another, thus accelerating model development. Read more. HARMONY is a hac...

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The CellML project — CellML | cellml.org Reviews

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The CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different modelling tools. It also enables them to reuse components from one model in another, thus accelerating model development. Read more. HARMONY is a hac...

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The CellML project — CellML | cellml.org Reviews

https://cellml.org

The CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different modelling tools. It also enables them to reuse components from one model in another, thus accelerating model development. Read more. HARMONY is a hac...

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models.cellml.org

CellML Model Repository — Physiome Model Repository

The list of processed model exposures (formats: 100 per page. Which are models that have documentation pages generated from the metadata they contain. Alternatively, you may start browsing via the categories that are listed below. Comments about the functional status or curation status of the models within this repository are the opinions of the CellML Model Repository curators. We do our best to accurately represent these models, but please contact us. 2001-2018 - The CellML Project.

lists.cellml.org

CellML Mailing Lists - home

Other List Domains . Separate list domains for faculties, departments and business units. Other List Domains [-]. Listfoe.auckland.ac.nz. Listfoed.auckland.ac.nz. Listscience.auckland.ac.nz. Listbioeng.auckland.ac.nz. Listfmhs.auckland.ac.nz. Faculty of Medical Health Sciences. Listausa.auckland.ac.nz. CellML Mailing Lists (@lists.cellml.org). All lists will have a listname.

INTERNAL PAGES

cellml.org

1

Call for CellML Editor nominations 2015 — CellML

https://www.cellml.org/about/news/call-for-cellml-editor-nominations-2015

Call for CellML Editor nominations 2015. Call for CellML Editor nominations 2015. This is a call for nominations for two CellML Editors to replace David Nickerson and Poul Nielsen, whose term ends with the approaching 9th International CellML Workshop. Nominations should be made via the form available at:. The nomination deadline is 5 April 2015. The document describing the election process is available at:. Http:/ www.cellml.org/community/election-of-editors. Crampin, and Gary Mirams. With David and Poul.

2

CellML community — CellML

https://www.cellml.org/community

CellML is an international collaborative initiative built around open source science and software. The cellml.org website is a community hub for all things CellML. This section contains information about projects, research groups and events within and related to the CellML community. If you have a research group or project you would like cellml.org to host information about, please contact the webmaster. And the cellml.org. Find out about how individuals are using CellML. CellML and related efforts.

3

CellML

https://www.cellml.org/sitemap

An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. Funding sources for the CellML Project. Modelling in CellML with COR. Modularity in CellML 1.1 tutorial. Curating models in the CellML model repository. Simulations and sessions in OpenCell. Translating a mathematical model into CellML. OpenCell basic model building tutorial. Using the PMR2 generated C code for CellML models. VPH tutorial held at EMBC 2013. CellML 1.0 API.

4

Funding sources for the CellML Project — CellML

https://www.cellml.org/about/funding

Funding sources for the CellML Project. Funding sources for the CellML Project. We would like to extend our thanks to our funding partners. The VPH NoE is a project which aims to help support and progress European research in biomedical modelling and simulation of the human body. This will improve our ability to predict, diagnose and treat disease, and have a dramatic impact on the future of healthcare, the pharmaceutical and medical device industries. With the aim of promoting mathematical research in N...

5

CellML DOM API: Core implementation 1.10 — CellML

https://www.cellml.org/tools/downloads/cellml_api/releases/1.10

CellML DOM API: Core implementation. CellML DOM API: Core implementation 1.10. CellML DOM API: Core implementation 1.10 (2011-09-14). For additional information about this project, please visit the overview page. Binary SDK for Linux x86-64. Linux (4.8 MB). Binary SDK for Linux x86. Linux (4.4 MB). CellML API Source Tarball. All platforms (2.0 MB). Binary SDK for Windows 32 bit MingW (zip). Windows (5.6 MB). Binary SDK for Windows 32 bit MingW (self-installer). Windows (3.6 MB). Windows (2.8 MB). All dep...

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insilicosoft.com

About InsilicoSoft

https://www.insilicosoft.com/about.html

The company was formed in 2013 in part as a means of enabling the continuation of professional web application development work which the founders were involved in whilst working at the Computer Science. Department of Oxford University. In addition to the original development activities the site is also used as an online archive for previous research work and as a development ground for new ideas, new technologies, and the exploration of areas of interest. Functional Curation ( website.

comodl.com

Open Source Brain

http://www.comodl.com/docs

Welcome to Open Source Brain! We hope youll find the information you require here, but if not, please get in touch. Browse the projects currently available on OSB ¶. Here is a quick video showing some of the tools you can use for browsing the projects on OSB. Explore cells and networks in 3D ¶. Here you can find a video showing how you can use the OSB Explorer to visualise cells and network models in 3D. Browse one of the projects ¶. Granule Cell by Solinas et al. 2010. Directory), see here. This is the ...

physiome.jp

Links

http://www.physiome.jp/link/index.html

Http:/ www.physiome.org.nz. Http:/ www.physiome.org. Http:/ www.europhysiome.org. Http:/ www.biomedtown.org. IMAG (Interagency Modeling and Analysis Group) Wiki. Http:/ www.imagwiki.org/mediawiki/. GCOE "in silico medicine". Http:/ www.mei.osaka-u.ac.jp/gCOE/english/. Http:/ www.incf.org. Http:/ www.neuroinf.jp. Neuroinformatics Japan Center (NIJC). Https:/ nijc.brain.riken.jp. Https:/ dynamicbrain.neuroinf.jp. Http:/ www.garuda-alliance.org. The Systems Biology Institute. Http:/ www.cellml.org.

gjfelix.org

Gerardo J. Félix-Martínez | Make your own basic cell diagrams

http://gjfelix.org/blog/make-a-basic-cell-diagram

Gerardo J. Félix-Martínez. Mdash; Academic and personal site. Make your own basic cell diagrams. Example of a cell diagram. The Illustrator file is available for download below. Recently, we published a review about the field of mathematical modeling of the pancreatic β-cell (you can find it here. I decided to upload it because three or four years ago, when I had been looking for a tool to design nice diagrams for my works and presentations, I found an open source project called “ The CellML project.

models.cellml.org

Physiome Model Repository

http://models.cellml.org/sitemap

An overview of the available content on this site. Keep the pointer still over an item for a few seconds to get its description. Beeler, Reuter, 1977. Reconstruction of the action potential of ventricular myocardial fibres. Schmid, Nash, Young, Hunter, 2006. Myocardial Material Parameter Estimation - A Comparative Study for Simple Shear (Separated Fung Law). Myocardial Material Parameter Estimation - A Comparative Study for Simple Shear (Taylor Series Expansion of the Tangent Law). MRNA expression levels...

models.cellml.org

Myofilament Mechanics — Physiome Model Repository

http://models.cellml.org/myofilament_mechanics

Adrian, Peachey, 1973. Reconstruction of the action potential of frog sartorius muscle. Campbell, Chandra, 2006. Functions of Stretch Activation in Heart Muscle. Cheng, Brown, Loeb, 2000. Virtual muscle: a computational approach to understanding the effects of muscle properties on motor control. Hai, Murphy, 1988. Cross-bridge phosphorylation and regulation of latch state in smooth muscle. Hunter, McCulloch, ter Keurs, 1998. Modelling the mechanical properties of cardiac muscle. Nash, Panfilov, 2004.

models.cellml.org

Circadian Rhythms — Physiome Model Repository

http://models.cellml.org/circadian_rhythms

Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff, Snoep,. Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex. Gerard, Goldbeter, 2010. Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle. A model for circadian oscillations in the Drosophila period protein (PER). A model for circadian oscillations in the Drosophila period protein (PER). Goldbeter, Pourquie, 2008. Goldbeter, Pourquie, 2008. Leloup, Goldbeter,. Modeling th...

models.cellml.org

Mechanical Constitutive Laws — Physiome Model Repository

http://models.cellml.org/mechanical_constitutive_laws

Simplified models for gas exchange in the human lungs. Simplified models for gas exchange in the human lungs. Costa, Holmes, McCulloch, 2001. Modelling Cardiac Mechanical Properties In Three Dimensions. Large deformation analysis of some soft biological tissues. Gasser, Ogden, Holzapfel, 2006. Fibre Dispersion Law (Version A). Gasser, Ogden, Holzapfel, 2006. Fibre Dispersion Law (Version B). Guccione, Mcculloch, Waldman, 1991. Teaching from classic papers: Hill's model of muscle contraction. Myocardial M...

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The CellML project — CellML

The CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different modelling tools. It also enables them to reuse components from one model in another, thus accelerating model development. Read more. HARMONY is a hac...

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