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CELLO:Subcellular Localization Predictive System

The Molecular Bioinformatics Center provides an integrated approach to the use of gene and protein sequence information, molecular structures, and related resources, in molecular biology.

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CELLO:Subcellular Localization Predictive System | cello.life.nctu.edu.tw Reviews
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CELLO:Subcellular Localization Predictive System | cello.life.nctu.edu.tw Reviews

https://cello.life.nctu.edu.tw

The Molecular Bioinformatics Center provides an integrated approach to the use of gene and protein sequence information, molecular structures, and related resources, in molecular biology.

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http://cello.life.nctu.edu.tw/cello.html

National Chiao Tung University. CELLO: A subCELlular LOcalization predictor. CELLO is a multi-class SVM classification system. CELLO uses 4 types of sequence coding schemes: the amino acid composition, the di-peptide composition, the partitioned amino acid composition and the sequence composition based on the physico-chemical properties of amino acids. Comparison of CELLO with other methods. Yu CS, Lin CJ, Hwang JK: Prediction of Subcellular Locations by Support Vector Machines Using Multiple Feature Vec...

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Tools for proteome annotation and proteomics

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Data on M.tb. Computaional Resources for Proteome Annotation and Proteomics. Servers integrated at CRDD. This is a web server for analysis and comparison of two-dimensional electrophoresis (2-DE) Gel images. It helps in annotating the virual 2-D gel image proteins on the basis of known molecular weight andpH scales of the markers. This is a server forpredicting G-protein-coupled receptors and for classifying them in families and sub-families. This server can play vital role in drug design, as GPCR ar...

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::TBI Core Facility::

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BLAST Search at NCKU. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. This is a customized BLAST tool supported by NCKU bioinformatics center. BLAST against PDB protein databank at NTHU. BLAST against Motif/Domain database at NTHU. Search your protein or DNA sequence against Motif/Domain database. BLAST against customized database (the databases built by yourself). Software for two-channel cell-based RNAi data [NHRI]. Deep-sequencing small RNA analysis p...

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http://e093.life.nctu.edu.tw/cello.html

National Chiao Tung University. CELLO: A subCELlular LOcalization predictor. CELLO is a multi-class SVM classification system. CELLO uses 4 types of sequence coding schemes: the amino acid composition, the di-peptide composition, the partitioned amino acid composition and the sequence composition based on the physico-chemical properties of amino acids. Comparison of CELLO with other methods. Yu CS, Lin CJ, Hwang JK: Prediction of Subcellular Locations by Support Vector Machines Using Multiple Feature Vec...

crdd.imtech.res.in crdd.imtech.res.in

Tools for proteome annotation and proteomics

http://crdd.imtech.res.in/pa.php

Data on M.tb. Computaional Resources for Proteome Annotation and Proteomics. Servers integrated at CRDD. This is a web server for analysis and comparison of two-dimensional electrophoresis (2-DE) Gel images. It helps in annotating the virual 2-D gel image proteins on the basis of known molecular weight andpH scales of the markers. This is a server forpredicting G-protein-coupled receptors and for classifying them in families and sub-families. This server can play vital role in drug design, as GPCR ar...

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CELLO:Subcellular Localization Predictive System

National Chiao Tung University. CELLO v.2.5: sub CEL. Paste the query sequences in FASTA format below. 1086005 Genbank Outer membrane/Extracellular (Autotransporter) major ring-forming surface protein precursor MTKISDVQEKNFLKRKEKSSSLRNRKFFQPLIATTLAFSLASSFVNAADAGNAGQAPVNAEGITVTVNQANKTATVSGNNGNATFTFTNGANTTVNGTADPAVTAPNIEVNIANTVNNFTVDGKPANQANQNLGAEGKPVNLNFDFGGIASSGTAKTFTLNLGGAGNANALTGNLNILGAGNATLNTNTNGSIASGGPVINVNKDATFNATFSGGATMTGNIVTGNTKETSGTGTNNITFDGPKQIPHNGSLIKDGTAVTGQADPATVLTGNISTYGGINNVTFEKGTMKGDIIAGNA...

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